Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GKC25_RS07925 Genome accession   NZ_CP046128
Coordinates   1605270..1606520 (+) Length   416 a.a.
NCBI ID   WP_034662214.1    Uniprot ID   A0AAE4B6L0
Organism   Bacillus pumilus strain V17C11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1600270..1611520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS07900 (GKC25_07830) - 1601679..1602407 (+) 729 WP_034662220.1 SDR family oxidoreductase -
  GKC25_RS07905 (GKC25_07835) - 1602481..1602738 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  GKC25_RS07910 (GKC25_07840) - 1602870..1603661 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  GKC25_RS07915 (GKC25_07845) - 1603685..1604596 (+) 912 WP_034662218.1 helix-turn-helix domain-containing protein -
  GKC25_RS07920 (GKC25_07850) pgsA 1604672..1605253 (+) 582 WP_034662216.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GKC25_RS07925 (GKC25_07855) cinA 1605270..1606520 (+) 1251 WP_034662214.1 competence/damage-inducible protein A Machinery gene
  GKC25_RS07930 (GKC25_07860) recA 1606697..1607737 (+) 1041 WP_034662211.1 recombinase RecA Machinery gene
  GKC25_RS07935 (GKC25_07865) rny 1608238..1609800 (+) 1563 WP_003211958.1 ribonuclease Y -
  GKC25_RS07940 (GKC25_07870) - 1609889..1610683 (+) 795 WP_034662209.1 TIGR00282 family metallophosphoesterase -
  GKC25_RS07945 (GKC25_07875) spoVS 1610885..1611145 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45677.72 Da        Isoelectric Point: 4.9232

>NTDB_id=401381 GKC25_RS07925 WP_034662214.1 1605270..1606520(+) (cinA) [Bacillus pumilus strain V17C11]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYDDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSIFSGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLAGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=401381 GKC25_RS07925 WP_034662214.1 1605270..1606520(+) (cinA) [Bacillus pumilus strain V17C11]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGGTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTTATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGACTACTT
TCGAAAGACTGGACGAGACATGTCGCCGAATAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTAAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAGACGATACATTTTATATGTTGCTTCCTGGACCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCGAAGCCGCTGATTTCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGCTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACAGAAGCGAAAATTTTAGCGCGGGTAGGTGAGTACTTCTACGGGTATGATGATACATCACTTGTCCGTGAAGC
TTCCAAGGCCTTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACTGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCATCGTCGATTTTTAGCGGCAGTGTCGTTTGTTATACAAATCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACGTTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTCTAGAGCTTGCTGAAGGTGCTAGAAAGCT
CGCGGGAAGTGATATTGGCATTAGTTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCTGTCGGAAAAGTGT
TCATTGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATACGGTCTGCATCACTTGCTCAATTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.94

99.76

0.748
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397

Multiple sequence alignment