Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GFU50_RS00190 Genome accession   NZ_CP046123
Coordinates   37966..39204 (+) Length   412 a.a.
NCBI ID   WP_010748493.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain EC291     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32966..44204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFU50_RS00170 (GFU50_00170) yfmF 33198..34466 (+) 1269 WP_010748490.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  GFU50_RS00175 (GFU50_00175) yfmH 34459..35757 (+) 1299 WP_010748491.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GFU50_RS00180 (GFU50_00180) - 36222..37124 (+) 903 WP_010748492.1 helix-turn-helix domain-containing protein -
  GFU50_RS00185 (GFU50_00185) pgsA 37257..37838 (+) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GFU50_RS00190 (GFU50_00190) cinA 37966..39204 (+) 1239 WP_010748493.1 competence/damage-inducible protein A Machinery gene
  GFU50_RS00195 (GFU50_00195) recA 39307..40350 (+) 1044 WP_005226448.1 recombinase RecA Machinery gene
  GFU50_RS00200 (GFU50_00200) rny 40594..42168 (+) 1575 WP_005232891.1 ribonuclease Y -
  GFU50_RS00205 (GFU50_00205) treR 42467..43183 (-) 717 WP_005226457.1 trehalose operon repressor -
  GFU50_RS00210 (GFU50_00210) pgmB 43238..43888 (-) 651 WP_010748494.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44904.04 Da        Isoelectric Point: 4.6520

>NTDB_id=401255 GFU50_RS00190 WP_010748493.1 37966..39204(+) (cinA) [Enterococcus casseliflavus strain EC291]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDCVSLPNPNGLAIGIFYQTTATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVERLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAATKSKLLGIDP
GLLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=401255 GFU50_RS00190 WP_010748493.1 37966..39204(+) (cinA) [Enterococcus casseliflavus strain EC291]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAGGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTATTATGTGGCGGTTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGAGTTAGTCAGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGAATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAAGACTGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAACCGCTACCAGTTATTTGCTGCTGCCGGGACCACCAAGTGAACTGCAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTATTAGAGCAGTTTCCCCAAGAAGAAGTCTTGCTTTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCGTTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCTCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACCGCAGACGAGGCGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGAGCG
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GGGCTTTTGGAAAGCTATGGGACTGTTAGTCAGGAGTGTGCGGAAGCAATGGCCGTCTATGCCCGCAAACAAGCCGAGAC
CGATTATGCGGTGGCGTTTACGGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGTACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGCCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCTGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.591

100

0.519
  cinA Streptococcus mitis SK321

50.355

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.517
  cinA Streptococcus pneumoniae R6

50.355

100

0.517
  cinA Streptococcus pneumoniae D39

50.355

100

0.517
  cinA Streptococcus mitis NCTC 12261

49.882

100

0.512
  cinA Streptococcus mutans UA159

49.76

100

0.502
  cinA Bacillus subtilis subsp. subtilis str. 168

44.988

99.272

0.447
  cinA Streptococcus suis isolate S10

43.237

100

0.434

Multiple sequence alignment