Detailed information
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | GJQ55_RS10715 | Genome accession | NZ_CP046056 |
| Coordinates | 2262074..2263774 (+) | Length | 566 a.a. |
| NCBI ID | WP_228344961.1 | Uniprot ID | - |
| Organism | Venatoribacter cucullus strain ASxL5 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2257074..2268774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJQ55_RS10700 (GJQ55_10625) | nadC | 2258319..2259164 (+) | 846 | WP_228344959.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GJQ55_RS13405 (GJQ55_10630) | - | 2259445..2259933 (+) | 489 | WP_275944423.1 | pilin | - |
| GJQ55_RS10710 (GJQ55_10635) | - | 2260153..2261997 (+) | 1845 | WP_228344960.1 | sulfatase-like hydrolase/transferase | - |
| GJQ55_RS10715 (GJQ55_10640) | pilB | 2262074..2263774 (+) | 1701 | WP_228344961.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GJQ55_RS10720 (GJQ55_10645) | pilC | 2263820..2265046 (+) | 1227 | WP_228344962.1 | type II secretion system F family protein | Machinery gene |
| GJQ55_RS10725 (GJQ55_10650) | pilD | 2265046..2265924 (+) | 879 | WP_228344963.1 | prepilin peptidase | Machinery gene |
| GJQ55_RS10730 (GJQ55_10655) | coaE | 2265924..2266523 (+) | 600 | WP_420907144.1 | dephospho-CoA kinase | - |
| GJQ55_RS10735 (GJQ55_10660) | yacG | 2266644..2266844 (+) | 201 | WP_228344964.1 | DNA gyrase inhibitor YacG | - |
| GJQ55_RS10740 (GJQ55_10665) | - | 2266960..2267418 (-) | 459 | WP_228344965.1 | copper chaperone PCu(A)C | - |
Sequence
Protein
Download Length: 566 a.a. Molecular weight: 61781.75 Da Isoelectric Point: 5.0195
>NTDB_id=400740 GJQ55_RS10715 WP_228344961.1 2262074..2263774(+) (pilB) [Venatoribacter cucullus strain ASxL5]
MAVLTGLPRRLVEQNLITSQQAQQVLDKSRQDKTSFVTAAVASGQVKARPVALLASEEFGVPLLDLTAFDFEVMPKELVS
RELIEKHRVLPLFQRGNRLYIAQSDPSAMLAIDEIKFATGMTIEAILVEEDKLSHAVDKFLAANDNSLGDLGGDFEDVDL
EDPEARSKEQEADSKEGTGDDAPIVRFVNKMLLDAIKAGSSDIHFEPYEKRYRVRYRTDGVLHEVSSPPVNLAGKIAARL
KVMSQMDISERRIPQDGRIKMKLSKSKAIDFRVNTLPTLWGEKIVLRILDPSSAKLGIDMLGYEPEQKALYMEALARPQG
MILVTGPTGSGKTVSLYTGLNILNVEGTNISTAEDPVEINLEGINQVNVNARVGLDFAAALRSFLRQDPDVVMVGEIRDL
DTASIAIKAAQTGHLVLSTLHTNSAAETLTRLANMGVPSFNIATSVSLIIAQRLARRLCSACKVPAEIPKETLLEAGFTE
AQLQDAEIYKPVGCEQCKGGYKGRVGIYEVVKITDSISRIIMEGGNSIEISDAARKEGFNDLRTSALMKVAQGVTSLEEA
NRVTTD
MAVLTGLPRRLVEQNLITSQQAQQVLDKSRQDKTSFVTAAVASGQVKARPVALLASEEFGVPLLDLTAFDFEVMPKELVS
RELIEKHRVLPLFQRGNRLYIAQSDPSAMLAIDEIKFATGMTIEAILVEEDKLSHAVDKFLAANDNSLGDLGGDFEDVDL
EDPEARSKEQEADSKEGTGDDAPIVRFVNKMLLDAIKAGSSDIHFEPYEKRYRVRYRTDGVLHEVSSPPVNLAGKIAARL
KVMSQMDISERRIPQDGRIKMKLSKSKAIDFRVNTLPTLWGEKIVLRILDPSSAKLGIDMLGYEPEQKALYMEALARPQG
MILVTGPTGSGKTVSLYTGLNILNVEGTNISTAEDPVEINLEGINQVNVNARVGLDFAAALRSFLRQDPDVVMVGEIRDL
DTASIAIKAAQTGHLVLSTLHTNSAAETLTRLANMGVPSFNIATSVSLIIAQRLARRLCSACKVPAEIPKETLLEAGFTE
AQLQDAEIYKPVGCEQCKGGYKGRVGIYEVVKITDSISRIIMEGGNSIEISDAARKEGFNDLRTSALMKVAQGVTSLEEA
NRVTTD
Nucleotide
Download Length: 1701 bp
>NTDB_id=400740 GJQ55_RS10715 WP_228344961.1 2262074..2263774(+) (pilB) [Venatoribacter cucullus strain ASxL5]
ATGGCCGTGCTGACCGGTTTGCCACGCCGTCTTGTCGAACAAAATCTGATCACCAGCCAGCAGGCACAGCAGGTACTGGA
TAAGTCCCGGCAGGATAAAACCAGCTTTGTAACGGCTGCCGTCGCCTCCGGGCAGGTGAAAGCGCGCCCGGTGGCGCTGC
TGGCCTCGGAAGAGTTTGGCGTACCGCTGCTGGATCTGACCGCCTTCGATTTTGAAGTAATGCCCAAAGAGCTGGTCAGC
CGTGAATTAATTGAAAAGCACCGTGTGTTGCCGCTGTTCCAGCGTGGCAACCGGCTGTACATCGCCCAGAGCGACCCCTC
GGCCATGCTGGCCATTGATGAAATCAAATTCGCCACCGGCATGACCATCGAAGCCATTCTGGTGGAAGAAGATAAATTGT
CCCACGCGGTGGATAAATTCCTGGCCGCCAACGACAACAGCCTGGGGGATTTGGGCGGCGACTTCGAAGATGTCGACCTG
GAAGACCCGGAAGCCCGCAGTAAAGAACAGGAAGCCGACAGCAAAGAAGGCACTGGCGATGACGCACCGATTGTGCGCTT
TGTGAACAAAATGCTGCTGGATGCTATTAAAGCCGGCTCGTCCGATATTCACTTTGAGCCCTACGAAAAGCGCTACCGCG
TGCGGTACCGTACCGATGGTGTATTGCACGAAGTCTCCAGCCCGCCGGTGAATCTGGCCGGTAAAATTGCTGCCCGTCTG
AAAGTGATGTCGCAAATGGATATTTCCGAGCGGCGGATTCCGCAGGACGGCCGCATCAAGATGAAGCTGTCCAAATCCAA
GGCCATCGACTTCCGGGTAAACACCTTGCCCACGTTGTGGGGCGAAAAAATCGTACTGCGGATTCTGGACCCGTCGTCGG
CCAAACTGGGCATTGATATGCTGGGTTACGAGCCGGAACAGAAAGCCCTGTATATGGAAGCGCTGGCGCGCCCGCAGGGC
ATGATTCTGGTTACCGGGCCCACGGGTTCGGGTAAAACCGTATCGCTGTACACCGGCCTGAATATTCTGAACGTCGAAGG
CACCAATATTTCCACCGCCGAAGACCCGGTGGAAATTAACCTGGAAGGTATTAACCAGGTGAACGTGAACGCCCGCGTGG
GGTTGGATTTCGCCGCGGCCCTGCGTTCGTTCCTGCGTCAGGACCCGGACGTGGTGATGGTGGGTGAGATCCGTGACCTG
GATACCGCTTCCATTGCCATTAAAGCGGCCCAGACCGGTCACTTGGTGCTGTCCACCCTGCACACCAACAGCGCCGCCGA
AACCTTAACGCGTCTGGCCAACATGGGCGTACCGTCCTTTAACATTGCCACCTCGGTATCGTTGATCATTGCCCAGCGTC
TGGCCCGGCGCTTGTGCTCAGCCTGTAAAGTACCGGCTGAAATCCCCAAAGAAACGCTGCTGGAAGCCGGTTTTACCGAA
GCCCAGCTGCAGGATGCCGAAATTTATAAGCCGGTGGGCTGCGAACAATGCAAAGGCGGTTATAAAGGCCGTGTTGGTAT
TTATGAAGTAGTTAAAATTACCGACAGCATCTCCCGTATTATTATGGAGGGCGGCAACTCCATCGAAATTTCGGACGCTG
CCCGCAAAGAAGGCTTTAACGATCTGCGCACCTCGGCCCTGATGAAAGTGGCACAAGGGGTAACCAGCCTGGAAGAAGCC
AACCGCGTAACCACCGACTGA
ATGGCCGTGCTGACCGGTTTGCCACGCCGTCTTGTCGAACAAAATCTGATCACCAGCCAGCAGGCACAGCAGGTACTGGA
TAAGTCCCGGCAGGATAAAACCAGCTTTGTAACGGCTGCCGTCGCCTCCGGGCAGGTGAAAGCGCGCCCGGTGGCGCTGC
TGGCCTCGGAAGAGTTTGGCGTACCGCTGCTGGATCTGACCGCCTTCGATTTTGAAGTAATGCCCAAAGAGCTGGTCAGC
CGTGAATTAATTGAAAAGCACCGTGTGTTGCCGCTGTTCCAGCGTGGCAACCGGCTGTACATCGCCCAGAGCGACCCCTC
GGCCATGCTGGCCATTGATGAAATCAAATTCGCCACCGGCATGACCATCGAAGCCATTCTGGTGGAAGAAGATAAATTGT
CCCACGCGGTGGATAAATTCCTGGCCGCCAACGACAACAGCCTGGGGGATTTGGGCGGCGACTTCGAAGATGTCGACCTG
GAAGACCCGGAAGCCCGCAGTAAAGAACAGGAAGCCGACAGCAAAGAAGGCACTGGCGATGACGCACCGATTGTGCGCTT
TGTGAACAAAATGCTGCTGGATGCTATTAAAGCCGGCTCGTCCGATATTCACTTTGAGCCCTACGAAAAGCGCTACCGCG
TGCGGTACCGTACCGATGGTGTATTGCACGAAGTCTCCAGCCCGCCGGTGAATCTGGCCGGTAAAATTGCTGCCCGTCTG
AAAGTGATGTCGCAAATGGATATTTCCGAGCGGCGGATTCCGCAGGACGGCCGCATCAAGATGAAGCTGTCCAAATCCAA
GGCCATCGACTTCCGGGTAAACACCTTGCCCACGTTGTGGGGCGAAAAAATCGTACTGCGGATTCTGGACCCGTCGTCGG
CCAAACTGGGCATTGATATGCTGGGTTACGAGCCGGAACAGAAAGCCCTGTATATGGAAGCGCTGGCGCGCCCGCAGGGC
ATGATTCTGGTTACCGGGCCCACGGGTTCGGGTAAAACCGTATCGCTGTACACCGGCCTGAATATTCTGAACGTCGAAGG
CACCAATATTTCCACCGCCGAAGACCCGGTGGAAATTAACCTGGAAGGTATTAACCAGGTGAACGTGAACGCCCGCGTGG
GGTTGGATTTCGCCGCGGCCCTGCGTTCGTTCCTGCGTCAGGACCCGGACGTGGTGATGGTGGGTGAGATCCGTGACCTG
GATACCGCTTCCATTGCCATTAAAGCGGCCCAGACCGGTCACTTGGTGCTGTCCACCCTGCACACCAACAGCGCCGCCGA
AACCTTAACGCGTCTGGCCAACATGGGCGTACCGTCCTTTAACATTGCCACCTCGGTATCGTTGATCATTGCCCAGCGTC
TGGCCCGGCGCTTGTGCTCAGCCTGTAAAGTACCGGCTGAAATCCCCAAAGAAACGCTGCTGGAAGCCGGTTTTACCGAA
GCCCAGCTGCAGGATGCCGAAATTTATAAGCCGGTGGGCTGCGAACAATGCAAAGGCGGTTATAAAGGCCGTGTTGGTAT
TTATGAAGTAGTTAAAATTACCGACAGCATCTCCCGTATTATTATGGAGGGCGGCAACTCCATCGAAATTTCGGACGCTG
CCCGCAAAGAAGGCTTTAACGATCTGCGCACCTCGGCCCTGATGAAAGTGGCACAAGGGGTAACCAGCCTGGAAGAAGCC
AACCGCGTAACCACCGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
62.721 |
100 |
0.627 |
| pilB | Acinetobacter baylyi ADP1 |
60.915 |
100 |
0.611 |
| pilB | Legionella pneumophila strain ERS1305867 |
55.398 |
99.823 |
0.553 |
| pilB | Vibrio cholerae strain A1552 |
50.709 |
99.647 |
0.505 |
| pilF | Neisseria gonorrhoeae MS11 |
50.353 |
100 |
0.504 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
50.538 |
98.587 |
0.498 |
| pilB | Vibrio campbellii strain DS40M4 |
49.117 |
100 |
0.491 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
38.681 |
99.117 |
0.383 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.662 |
93.993 |
0.373 |
| pilF | Thermus thermophilus HB27 |
36.778 |
100 |
0.371 |