Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilB   Type   Machinery gene
Locus tag   GJQ55_RS10715 Genome accession   NZ_CP046056
Coordinates   2262074..2263774 (+) Length   566 a.a.
NCBI ID   WP_228344961.1    Uniprot ID   -
Organism   Venatoribacter cucullus strain ASxL5     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2257074..2268774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJQ55_RS10700 (GJQ55_10625) nadC 2258319..2259164 (+) 846 WP_228344959.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GJQ55_RS13405 (GJQ55_10630) - 2259445..2259933 (+) 489 WP_275944423.1 pilin -
  GJQ55_RS10710 (GJQ55_10635) - 2260153..2261997 (+) 1845 WP_228344960.1 sulfatase-like hydrolase/transferase -
  GJQ55_RS10715 (GJQ55_10640) pilB 2262074..2263774 (+) 1701 WP_228344961.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GJQ55_RS10720 (GJQ55_10645) pilC 2263820..2265046 (+) 1227 WP_228344962.1 type II secretion system F family protein Machinery gene
  GJQ55_RS10725 (GJQ55_10650) pilD 2265046..2265924 (+) 879 WP_228344963.1 prepilin peptidase Machinery gene
  GJQ55_RS10730 (GJQ55_10655) coaE 2265924..2266523 (+) 600 WP_420907144.1 dephospho-CoA kinase -
  GJQ55_RS10735 (GJQ55_10660) yacG 2266644..2266844 (+) 201 WP_228344964.1 DNA gyrase inhibitor YacG -
  GJQ55_RS10740 (GJQ55_10665) - 2266960..2267418 (-) 459 WP_228344965.1 copper chaperone PCu(A)C -

Sequence


Protein


Download         Length: 566 a.a.        Molecular weight: 61781.75 Da        Isoelectric Point: 5.0195

>NTDB_id=400740 GJQ55_RS10715 WP_228344961.1 2262074..2263774(+) (pilB) [Venatoribacter cucullus strain ASxL5]
MAVLTGLPRRLVEQNLITSQQAQQVLDKSRQDKTSFVTAAVASGQVKARPVALLASEEFGVPLLDLTAFDFEVMPKELVS
RELIEKHRVLPLFQRGNRLYIAQSDPSAMLAIDEIKFATGMTIEAILVEEDKLSHAVDKFLAANDNSLGDLGGDFEDVDL
EDPEARSKEQEADSKEGTGDDAPIVRFVNKMLLDAIKAGSSDIHFEPYEKRYRVRYRTDGVLHEVSSPPVNLAGKIAARL
KVMSQMDISERRIPQDGRIKMKLSKSKAIDFRVNTLPTLWGEKIVLRILDPSSAKLGIDMLGYEPEQKALYMEALARPQG
MILVTGPTGSGKTVSLYTGLNILNVEGTNISTAEDPVEINLEGINQVNVNARVGLDFAAALRSFLRQDPDVVMVGEIRDL
DTASIAIKAAQTGHLVLSTLHTNSAAETLTRLANMGVPSFNIATSVSLIIAQRLARRLCSACKVPAEIPKETLLEAGFTE
AQLQDAEIYKPVGCEQCKGGYKGRVGIYEVVKITDSISRIIMEGGNSIEISDAARKEGFNDLRTSALMKVAQGVTSLEEA
NRVTTD

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=400740 GJQ55_RS10715 WP_228344961.1 2262074..2263774(+) (pilB) [Venatoribacter cucullus strain ASxL5]
ATGGCCGTGCTGACCGGTTTGCCACGCCGTCTTGTCGAACAAAATCTGATCACCAGCCAGCAGGCACAGCAGGTACTGGA
TAAGTCCCGGCAGGATAAAACCAGCTTTGTAACGGCTGCCGTCGCCTCCGGGCAGGTGAAAGCGCGCCCGGTGGCGCTGC
TGGCCTCGGAAGAGTTTGGCGTACCGCTGCTGGATCTGACCGCCTTCGATTTTGAAGTAATGCCCAAAGAGCTGGTCAGC
CGTGAATTAATTGAAAAGCACCGTGTGTTGCCGCTGTTCCAGCGTGGCAACCGGCTGTACATCGCCCAGAGCGACCCCTC
GGCCATGCTGGCCATTGATGAAATCAAATTCGCCACCGGCATGACCATCGAAGCCATTCTGGTGGAAGAAGATAAATTGT
CCCACGCGGTGGATAAATTCCTGGCCGCCAACGACAACAGCCTGGGGGATTTGGGCGGCGACTTCGAAGATGTCGACCTG
GAAGACCCGGAAGCCCGCAGTAAAGAACAGGAAGCCGACAGCAAAGAAGGCACTGGCGATGACGCACCGATTGTGCGCTT
TGTGAACAAAATGCTGCTGGATGCTATTAAAGCCGGCTCGTCCGATATTCACTTTGAGCCCTACGAAAAGCGCTACCGCG
TGCGGTACCGTACCGATGGTGTATTGCACGAAGTCTCCAGCCCGCCGGTGAATCTGGCCGGTAAAATTGCTGCCCGTCTG
AAAGTGATGTCGCAAATGGATATTTCCGAGCGGCGGATTCCGCAGGACGGCCGCATCAAGATGAAGCTGTCCAAATCCAA
GGCCATCGACTTCCGGGTAAACACCTTGCCCACGTTGTGGGGCGAAAAAATCGTACTGCGGATTCTGGACCCGTCGTCGG
CCAAACTGGGCATTGATATGCTGGGTTACGAGCCGGAACAGAAAGCCCTGTATATGGAAGCGCTGGCGCGCCCGCAGGGC
ATGATTCTGGTTACCGGGCCCACGGGTTCGGGTAAAACCGTATCGCTGTACACCGGCCTGAATATTCTGAACGTCGAAGG
CACCAATATTTCCACCGCCGAAGACCCGGTGGAAATTAACCTGGAAGGTATTAACCAGGTGAACGTGAACGCCCGCGTGG
GGTTGGATTTCGCCGCGGCCCTGCGTTCGTTCCTGCGTCAGGACCCGGACGTGGTGATGGTGGGTGAGATCCGTGACCTG
GATACCGCTTCCATTGCCATTAAAGCGGCCCAGACCGGTCACTTGGTGCTGTCCACCCTGCACACCAACAGCGCCGCCGA
AACCTTAACGCGTCTGGCCAACATGGGCGTACCGTCCTTTAACATTGCCACCTCGGTATCGTTGATCATTGCCCAGCGTC
TGGCCCGGCGCTTGTGCTCAGCCTGTAAAGTACCGGCTGAAATCCCCAAAGAAACGCTGCTGGAAGCCGGTTTTACCGAA
GCCCAGCTGCAGGATGCCGAAATTTATAAGCCGGTGGGCTGCGAACAATGCAAAGGCGGTTATAAAGGCCGTGTTGGTAT
TTATGAAGTAGTTAAAATTACCGACAGCATCTCCCGTATTATTATGGAGGGCGGCAACTCCATCGAAATTTCGGACGCTG
CCCGCAAAGAAGGCTTTAACGATCTGCGCACCTCGGCCCTGATGAAAGTGGCACAAGGGGTAACCAGCCTGGAAGAAGCC
AACCGCGTAACCACCGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

62.721

100

0.627

  pilB Acinetobacter baylyi ADP1

60.915

100

0.611

  pilB Legionella pneumophila strain ERS1305867

55.398

99.823

0.553

  pilB Vibrio cholerae strain A1552

50.709

99.647

0.505

  pilF Neisseria gonorrhoeae MS11

50.353

100

0.504

  pilB Vibrio parahaemolyticus RIMD 2210633

50.538

98.587

0.498

  pilB Vibrio campbellii strain DS40M4

49.117

100

0.491

  pilB/pilB1 Synechocystis sp. PCC 6803

38.681

99.117

0.383

  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.662

93.993

0.373

  pilF Thermus thermophilus HB27

36.778

100

0.371


Multiple sequence alignment