Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GJQ55_RS10720 | Genome accession | NZ_CP046056 |
| Coordinates | 2263820..2265046 (+) | Length | 408 a.a. |
| NCBI ID | WP_228344962.1 | Uniprot ID | A0A9X7YPM8 |
| Organism | Venatoribacter cucullus strain ASxL5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2258820..2270046
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJQ55_RS13405 (GJQ55_10630) | - | 2259445..2259933 (+) | 489 | WP_275944423.1 | pilin | - |
| GJQ55_RS10710 (GJQ55_10635) | - | 2260153..2261997 (+) | 1845 | WP_228344960.1 | sulfatase-like hydrolase/transferase | - |
| GJQ55_RS10715 (GJQ55_10640) | pilB | 2262074..2263774 (+) | 1701 | WP_228344961.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GJQ55_RS10720 (GJQ55_10645) | pilC | 2263820..2265046 (+) | 1227 | WP_228344962.1 | type II secretion system F family protein | Machinery gene |
| GJQ55_RS10725 (GJQ55_10650) | pilD | 2265046..2265924 (+) | 879 | WP_228344963.1 | prepilin peptidase | Machinery gene |
| GJQ55_RS10730 (GJQ55_10655) | coaE | 2265924..2266523 (+) | 600 | WP_420907144.1 | dephospho-CoA kinase | - |
| GJQ55_RS10735 (GJQ55_10660) | yacG | 2266644..2266844 (+) | 201 | WP_228344964.1 | DNA gyrase inhibitor YacG | - |
| GJQ55_RS10740 (GJQ55_10665) | - | 2266960..2267418 (-) | 459 | WP_228344965.1 | copper chaperone PCu(A)C | - |
| GJQ55_RS10745 (GJQ55_10670) | - | 2267550..2269511 (-) | 1962 | WP_228344966.1 | EAL domain-containing protein | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44434.95 Da Isoelectric Point: 9.0277
>NTDB_id=400741 GJQ55_RS10720 WP_228344962.1 2263820..2265046(+) (pilC) [Venatoribacter cucullus strain ASxL5]
MAKQIKNSSFTWEGTNRRGQTIKGEMSGQNAAIVKAQLRKQGVNPLKVRKAAQPLFGIGGPKKKKIQSSDITFFTRQMAT
MIKAGVPLVQSFDIVADGMDNVSMKELVYTIRDSVSAGNDFASALKQHPEYFDDLTCNLVESGEQAGALESMLDKVAVYK
EKTESLKKKIKKALMYPAVTLAIAFIVTIILLVKVVPTFQEMFNNFGAELPAPTQFVVYLSVLAQTYWLHAFGILAVIGV
GFTQGLKRSPAFRDAFEKFTLQVPVFGDLIRKAAVARYARVLSTTFAAGVPLVEALESVSGAVGNVVYREAVLKIRDEVS
SGQQMHFAMKSTGVFPNMVVQMTSIGEESGALDAMLDKAATYFEEDVDATVDGMTAMLEPMVMAFLGIVIGGLIIAMYLP
IFQMGDVV
MAKQIKNSSFTWEGTNRRGQTIKGEMSGQNAAIVKAQLRKQGVNPLKVRKAAQPLFGIGGPKKKKIQSSDITFFTRQMAT
MIKAGVPLVQSFDIVADGMDNVSMKELVYTIRDSVSAGNDFASALKQHPEYFDDLTCNLVESGEQAGALESMLDKVAVYK
EKTESLKKKIKKALMYPAVTLAIAFIVTIILLVKVVPTFQEMFNNFGAELPAPTQFVVYLSVLAQTYWLHAFGILAVIGV
GFTQGLKRSPAFRDAFEKFTLQVPVFGDLIRKAAVARYARVLSTTFAAGVPLVEALESVSGAVGNVVYREAVLKIRDEVS
SGQQMHFAMKSTGVFPNMVVQMTSIGEESGALDAMLDKAATYFEEDVDATVDGMTAMLEPMVMAFLGIVIGGLIIAMYLP
IFQMGDVV
Nucleotide
Download Length: 1227 bp
>NTDB_id=400741 GJQ55_RS10720 WP_228344962.1 2263820..2265046(+) (pilC) [Venatoribacter cucullus strain ASxL5]
ATGGCCAAACAAATTAAAAACAGCAGCTTCACCTGGGAAGGCACCAACCGCCGCGGGCAGACCATTAAGGGCGAAATGTC
GGGCCAGAACGCCGCTATCGTGAAAGCCCAGCTGCGCAAACAGGGTGTAAACCCGCTGAAAGTGCGCAAAGCCGCGCAGC
CGCTGTTTGGCATTGGTGGGCCGAAGAAAAAGAAAATTCAGTCATCAGACATCACCTTTTTTACCCGCCAGATGGCCACC
ATGATCAAAGCCGGTGTGCCGCTGGTGCAGTCGTTCGACATCGTTGCCGATGGCATGGACAACGTCTCGATGAAAGAGCT
GGTGTACACCATCCGTGACAGCGTCTCGGCGGGTAACGATTTTGCTTCGGCTCTGAAACAGCACCCGGAATACTTTGATG
ATTTAACCTGCAACCTGGTGGAATCCGGTGAACAGGCCGGTGCGCTGGAGTCCATGCTGGACAAAGTAGCGGTGTATAAA
GAAAAAACCGAATCGCTGAAAAAGAAAATTAAAAAAGCCCTGATGTACCCGGCCGTTACGCTGGCCATCGCTTTTATTGT
GACCATTATCCTGCTGGTGAAAGTGGTGCCGACCTTCCAGGAAATGTTCAATAACTTTGGTGCTGAACTGCCGGCGCCTA
CGCAGTTTGTGGTGTATCTGTCCGTGCTGGCACAAACCTACTGGTTGCACGCCTTCGGTATTCTGGCCGTTATCGGTGTG
GGCTTTACCCAGGGCCTGAAACGCTCGCCGGCATTCCGTGATGCTTTTGAAAAATTCACCCTGCAGGTACCGGTGTTCGG
TGACTTAATCCGCAAAGCGGCAGTAGCCCGTTATGCCCGCGTACTCTCGACCACCTTTGCTGCCGGTGTGCCCCTGGTAG
AAGCGCTGGAGTCGGTATCCGGTGCTGTGGGCAACGTGGTGTACCGTGAAGCGGTGCTGAAAATCCGTGATGAAGTCTCG
TCCGGCCAGCAGATGCACTTTGCCATGAAATCCACCGGGGTGTTCCCCAACATGGTGGTGCAGATGACCAGTATTGGTGA
AGAATCAGGTGCTCTGGATGCCATGCTAGATAAAGCCGCCACCTACTTTGAAGAAGACGTCGATGCCACGGTAGACGGCA
TGACCGCCATGCTGGAACCCATGGTAATGGCGTTCCTGGGTATTGTTATTGGTGGCCTGATCATCGCCATGTACCTGCCC
ATCTTCCAGATGGGGGACGTGGTGTAA
ATGGCCAAACAAATTAAAAACAGCAGCTTCACCTGGGAAGGCACCAACCGCCGCGGGCAGACCATTAAGGGCGAAATGTC
GGGCCAGAACGCCGCTATCGTGAAAGCCCAGCTGCGCAAACAGGGTGTAAACCCGCTGAAAGTGCGCAAAGCCGCGCAGC
CGCTGTTTGGCATTGGTGGGCCGAAGAAAAAGAAAATTCAGTCATCAGACATCACCTTTTTTACCCGCCAGATGGCCACC
ATGATCAAAGCCGGTGTGCCGCTGGTGCAGTCGTTCGACATCGTTGCCGATGGCATGGACAACGTCTCGATGAAAGAGCT
GGTGTACACCATCCGTGACAGCGTCTCGGCGGGTAACGATTTTGCTTCGGCTCTGAAACAGCACCCGGAATACTTTGATG
ATTTAACCTGCAACCTGGTGGAATCCGGTGAACAGGCCGGTGCGCTGGAGTCCATGCTGGACAAAGTAGCGGTGTATAAA
GAAAAAACCGAATCGCTGAAAAAGAAAATTAAAAAAGCCCTGATGTACCCGGCCGTTACGCTGGCCATCGCTTTTATTGT
GACCATTATCCTGCTGGTGAAAGTGGTGCCGACCTTCCAGGAAATGTTCAATAACTTTGGTGCTGAACTGCCGGCGCCTA
CGCAGTTTGTGGTGTATCTGTCCGTGCTGGCACAAACCTACTGGTTGCACGCCTTCGGTATTCTGGCCGTTATCGGTGTG
GGCTTTACCCAGGGCCTGAAACGCTCGCCGGCATTCCGTGATGCTTTTGAAAAATTCACCCTGCAGGTACCGGTGTTCGG
TGACTTAATCCGCAAAGCGGCAGTAGCCCGTTATGCCCGCGTACTCTCGACCACCTTTGCTGCCGGTGTGCCCCTGGTAG
AAGCGCTGGAGTCGGTATCCGGTGCTGTGGGCAACGTGGTGTACCGTGAAGCGGTGCTGAAAATCCGTGATGAAGTCTCG
TCCGGCCAGCAGATGCACTTTGCCATGAAATCCACCGGGGTGTTCCCCAACATGGTGGTGCAGATGACCAGTATTGGTGA
AGAATCAGGTGCTCTGGATGCCATGCTAGATAAAGCCGCCACCTACTTTGAAGAAGACGTCGATGCCACGGTAGACGGCA
TGACCGCCATGCTGGAACCCATGGTAATGGCGTTCCTGGGTATTGTTATTGGTGGCCTGATCATCGCCATGTACCTGCCC
ATCTTCCAGATGGGGGACGTGGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
60.591 |
99.51 |
0.603 |
| pilC | Acinetobacter baumannii D1279779 |
56 |
98.039 |
0.549 |
| pilC | Acinetobacter baylyi ADP1 |
55.473 |
98.529 |
0.547 |
| pilC | Legionella pneumophila strain ERS1305867 |
50.614 |
99.755 |
0.505 |
| pilG | Neisseria meningitidis 44/76-A |
43.627 |
100 |
0.436 |
| pilG | Neisseria gonorrhoeae MS11 |
43.627 |
100 |
0.436 |
| pilC | Vibrio cholerae strain A1552 |
38.75 |
98.039 |
0.38 |
| pilC | Vibrio campbellii strain DS40M4 |
37.349 |
100 |
0.38 |