Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GIG89_RS09680 Genome accession   NZ_CP045924
Coordinates   1920989..1921483 (-) Length   164 a.a.
NCBI ID   WP_017369521.1    Uniprot ID   A0A9Q9D6U2
Organism   Lactococcus petauri strain CF11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1915989..1926483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIG89_RS09650 - 1916305..1917486 (+) 1182 WP_153925467.1 MFS transporter -
  GIG89_RS09655 recX 1917610..1918443 (+) 834 WP_019293313.1 recombination regulator RecX -
  GIG89_RS09660 - 1918526..1919374 (+) 849 WP_019291952.1 MurR/RpiR family transcriptional regulator -
  GIG89_RS09665 - 1919406..1919714 (+) 309 WP_019291953.1 DUF960 domain-containing protein -
  GIG89_RS09670 - 1919748..1920515 (-) 768 WP_040087034.1 metallophosphoesterase -
  GIG89_RS09675 rpsR 1920624..1920869 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  GIG89_RS09680 ssb 1920989..1921483 (-) 495 WP_017369521.1 single-stranded DNA-binding protein Machinery gene
  GIG89_RS09685 rpsF 1921521..1921814 (-) 294 WP_003133129.1 30S ribosomal protein S6 -
  GIG89_RS09690 - 1922000..1922212 (-) 213 WP_019291955.1 hypothetical protein -
  GIG89_RS09695 - 1922679..1924142 (+) 1464 WP_019291956.1 amino acid permease -
  GIG89_RS09700 dnaX 1924174..1925832 (-) 1659 WP_019291957.1 DNA polymerase III subunit gamma/tau -
  GIG89_RS09705 - 1925845..1926465 (-) 621 WP_003133126.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18019.88 Da        Isoelectric Point: 4.9533

>NTDB_id=399210 GIG89_RS09680 WP_017369521.1 1920989..1921483(-) (ssb) [Lactococcus petauri strain CF11]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=399210 GIG89_RS09680 WP_017369521.1 1920989..1921483(-) (ssb) [Lactococcus petauri strain CF11]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372

Multiple sequence alignment