Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GE376_RS19050 Genome accession   NZ_CP045606
Coordinates   3816059..3817297 (-) Length   412 a.a.
NCBI ID   WP_153218225.1    Uniprot ID   -
Organism   Bacillus cereus strain SB1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3811059..3822297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE376_RS19030 (GE376_19465) spoVS 3811468..3811728 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  GE376_RS19035 (GE376_19470) - 3811878..3812672 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  GE376_RS19040 (GE376_19475) rny 3812835..3814400 (-) 1566 WP_000099769.1 ribonuclease Y -
  GE376_RS19045 (GE376_19480) recA 3814883..3815914 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  GE376_RS19050 (GE376_19485) cinA 3816059..3817297 (-) 1239 WP_153218225.1 competence/damage-inducible protein CinA Machinery gene
  GE376_RS19055 (GE376_19490) pgsA 3817318..3817896 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GE376_RS19060 (GE376_19495) - 3817961..3818872 (-) 912 WP_153218334.1 helix-turn-helix domain-containing protein -
  GE376_RS19065 (GE376_19500) - 3818894..3819679 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  GE376_RS19070 (GE376_19505) - 3819818..3820066 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  GE376_RS19075 (GE376_19510) ymfI 3820142..3820855 (-) 714 WP_153218226.1 elongation factor P 5-aminopentanone reductase -
  GE376_RS19080 (GE376_19515) yfmH 3820956..3822242 (-) 1287 WP_023522828.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45394.70 Da        Isoelectric Point: 5.5024

>NTDB_id=395638 GE376_RS19050 WP_153218225.1 3816059..3817297(-) (cinA) [Bacillus cereus strain SB1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLGIKGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=395638 GE376_RS19050 WP_153218225.1 3816059..3817297(-) (cinA) [Bacillus cereus strain SB1]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTATTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCACGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAGGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGGGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.293

99.515

0.58
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae TIGR4

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.062

100

0.468
  cinA Streptococcus pneumoniae R6

46.062

100

0.468
  cinA Streptococcus pneumoniae D39

45.823

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369

Multiple sequence alignment