Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GFH33_RS20330 Genome accession   NZ_CP045585
Coordinates   3947317..3948555 (-) Length   412 a.a.
NCBI ID   WP_000990688.1    Uniprot ID   A0A9W5QDY8
Organism   Bacillus thuringiensis strain x023     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3942317..3953555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH33_RS20310 (GFH33_20310) spoVS 3942727..3942987 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  GFH33_RS20315 (GFH33_20315) - 3943137..3943931 (-) 795 WP_001221096.1 TIGR00282 family metallophosphoesterase -
  GFH33_RS20320 (GFH33_20320) rny 3944094..3945659 (-) 1566 WP_000099769.1 ribonuclease Y -
  GFH33_RS20325 (GFH33_20325) recA 3946141..3947172 (-) 1032 WP_001283860.1 recombinase RecA Machinery gene
  GFH33_RS20330 (GFH33_20330) cinA 3947317..3948555 (-) 1239 WP_000990688.1 competence/damage-inducible protein CinA Machinery gene
  GFH33_RS20335 (GFH33_20335) pgsA 3948576..3949154 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GFH33_RS20340 (GFH33_20340) - 3949219..3950130 (-) 912 WP_000137491.1 RodZ domain-containing protein -
  GFH33_RS20345 (GFH33_20345) - 3950152..3950937 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  GFH33_RS20350 (GFH33_20350) - 3951076..3951324 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  GFH33_RS20355 (GFH33_20355) - 3951400..3952113 (-) 714 WP_000759607.1 SDR family oxidoreductase -
  GFH33_RS20360 (GFH33_20360) - 3952214..3953500 (-) 1287 WP_000411982.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45479.80 Da        Isoelectric Point: 5.3499

>NTDB_id=395334 GFH33_RS20330 WP_000990688.1 3947317..3948555(-) (cinA) [Bacillus thuringiensis strain x023]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=395334 GFH33_RS20330 WP_000990688.1 3947317..3948555(-) (cinA) [Bacillus thuringiensis strain x023]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCAACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAATTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.98

96.602

0.444
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369

Multiple sequence alignment