Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GFB64_RS04290 Genome accession   NZ_CP045567
Coordinates   899950..901191 (+) Length   413 a.a.
NCBI ID   WP_003569520.1    Uniprot ID   A0A829GUR5
Organism   Lacticaseibacillus paracasei strain TK-P4A     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 894950..906191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB64_RS04270 (GFB64_04615) yfmH 895950..897242 (+) 1293 WP_011674319.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GFB64_RS04275 (GFB64_04620) ymfI 897242..897970 (+) 729 WP_071252572.1 elongation factor P 5-aminopentanone reductase -
  GFB64_RS04280 (GFB64_04625) - 898057..898986 (+) 930 WP_003569516.1 helix-turn-helix domain-containing protein -
  GFB64_RS04285 (GFB64_04630) pgsA 898983..899576 (+) 594 WP_003569518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GFB64_RS04290 (GFB64_04640) cinA 899950..901191 (+) 1242 WP_003569520.1 competence/damage-inducible protein A Machinery gene
  GFB64_RS04295 (GFB64_04645) recA 901248..902309 (+) 1062 WP_003587498.1 recombinase RecA Machinery gene
  GFB64_RS04300 (GFB64_04650) rny 902604..904175 (+) 1572 WP_003657913.1 ribonuclease Y -
  GFB64_RS04305 (GFB64_04655) - 904269..904919 (-) 651 WP_003593868.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44239.57 Da        Isoelectric Point: 6.1814

>NTDB_id=395227 GFB64_RS04290 WP_003569520.1 899950..901191(+) (cinA) [Lacticaseibacillus paracasei strain TK-P4A]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLEEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPAAMAKLQARAKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPRLAKWSGHAEVMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGANEKDADAKLEPMV
GAIMDRDGQYFYGYGDDNSLAKELVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=395227 GFB64_RS04290 WP_003569520.1 899950..901191(+) (cinA) [Lacticaseibacillus paracasei strain TK-P4A]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGTCCGCGACTTGAGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGCCGCTATGGCTAAATTACAGGCGCGCGCCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGTGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCCAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAGTTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTAACGAAAAAGACGCTGATGCAAAGTTAGAACCAATGGTC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGCTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCCGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGAGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829GUR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.651

100

0.53
  cinA Streptococcus mitis SK321

51.537

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.415

100

0.528
  cinA Streptococcus mutans UA159

52.174

100

0.523
  cinA Streptococcus pneumoniae Rx1

50.948

100

0.521
  cinA Streptococcus pneumoniae R6

50.948

100

0.521
  cinA Streptococcus pneumoniae D39

50.711

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

45.012

99.516

0.448
  cinA Streptococcus suis isolate S10

42.328

91.525

0.387

Multiple sequence alignment