Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   HJ571_RS26560 Genome accession   NZ_CP053747
Coordinates   5657019..5657483 (-) Length   154 a.a.
NCBI ID   WP_023129290.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pae1255-NDM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5652019..5662483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJ571_RS26540 (HJ571_26550) nadC 5654519..5655367 (+) 849 WP_003122081.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HJ571_RS26550 (HJ571_26560) - 5655548..5656414 (-) 867 WP_225007570.1 O-antigen ligase family protein -
  HJ571_RS26555 - 5656424..5656930 (-) 507 WP_225007572.1 hypothetical protein -
  HJ571_RS26560 (HJ571_26565) pilA/pilAI 5657019..5657483 (-) 465 WP_023129290.1 pilin Machinery gene
  HJ571_RS26565 (HJ571_26570) pilB 5657714..5659414 (+) 1701 WP_179839642.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HJ571_RS26570 (HJ571_26575) pilC 5659418..5660635 (+) 1218 WP_003161763.1 type II secretion system F family protein Machinery gene
  HJ571_RS26575 (HJ571_26580) pilD 5660636..5661508 (+) 873 WP_034037193.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  HJ571_RS26580 (HJ571_26585) coaE 5661505..5662116 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  HJ571_RS26585 (HJ571_26590) yacG 5662113..5662313 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16148.47 Da        Isoelectric Point: 8.9986

>NTDB_id=394167 HJ571_RS26560 WP_023129290.1 5657019..5657483(-) (pilA/pilAI) [Pseudomonas aeruginosa strain Pae1255-NDM1]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSNDSPKNDEYDLGFTS
STLLTGDGKGQIKIDKADTATPEISGTLGRSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKANYAPANCPKS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=394167 HJ571_RS26560 WP_023129290.1 5657019..5657483(-) (pilA/pilAI) [Pseudomonas aeruginosa strain Pae1255-NDM1]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATATCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAACGATTCTCCCAAAAACGATGAGTATGATCTTGGCTTTACCAGT
TCTACTCTGCTTACCGGTGACGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
CTTGGGCCGCTCTTCTGGTAAAGGTATTGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-151)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

44.516

100

0.448
  pilA Acinetobacter baumannii strain A118

42.857

100

0.429
  pilA Pseudomonas aeruginosa PAK

41.139

100

0.422
  pilA Ralstonia pseudosolanacearum GMI1000

37.059

100

0.409
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.073

98.052

0.383
  pilA Vibrio cholerae strain A1552

39.073

98.052

0.383
  pilA Vibrio cholerae C6706

39.073

98.052

0.383
  pilA2 Legionella pneumophila str. Paris

37.838

96.104

0.364

Multiple sequence alignment