Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FS418_RS03515 Genome accession   NZ_CP045427
Coordinates   811993..813264 (-) Length   423 a.a.
NCBI ID   WP_142871698.1    Uniprot ID   A0AAJ4AP79
Organism   Shewanella sp. YLB-09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806993..818264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS418_RS03490 (FS418_03485) mutT 808929..809336 (-) 408 WP_142871693.1 8-oxo-dGTP diphosphatase MutT -
  FS418_RS03495 (FS418_03490) yacG 809340..809552 (-) 213 WP_142871694.1 DNA gyrase inhibitor YacG -
  FS418_RS03500 (FS418_03495) zapD 809638..810372 (-) 735 WP_142871695.1 cell division protein ZapD -
  FS418_RS03505 (FS418_03500) coaE 810381..810986 (-) 606 WP_142871696.1 dephospho-CoA kinase -
  FS418_RS03510 (FS418_03505) pilD 811022..811933 (-) 912 WP_142871697.1 A24 family peptidase Machinery gene
  FS418_RS03515 (FS418_03510) pilC 811993..813264 (-) 1272 WP_142871698.1 type II secretion system F family protein Machinery gene
  FS418_RS03520 (FS418_03515) pilB 813364..815073 (-) 1710 WP_142871699.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FS418_RS03525 (FS418_03520) - 815152..815550 (-) 399 WP_185965783.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FS418_RS03530 (FS418_03525) nadC 816507..817409 (-) 903 WP_142871701.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46096.39 Da        Isoelectric Point: 10.1397

>NTDB_id=394027 FS418_RS03515 WP_142871698.1 811993..813264(-) (pilC) [Shewanella sp. YLB-09]
MATAATIKKRQTRNKKNNAKSQPKVFTFEWKGVNRDGQKTSGELKGSTAAEIRSQLKSQGVNPKSVKKQSASLFKLGDPK
ISAMDIAMFTRQVATMLSAGVPLVTTIEMLGRGHEKAKVRELLATILNDVQSGIPLSDALRPHRKYFDDLYVDLVAAGEH
SGSLDAVFDRIAMYREKAEALKSKIKKAMFYPAAVVVVAIGVTTLLLLFVVPQFQEIFAGFGAELPAFTQLVIEISEALQ
ASWYIFAVAIIITIILFKRAHLHSQKFRDQVDAAMLKIPAIGPILHKAAMARFARTLSTTFAAGVPLIDGLESAAGASGN
AVYRKALIKVRSEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGGLDDMLNKVANIYEMQVDDAVDGLSSLIEPIMMVV
IGTLVGGLIIAMYLPIFEMGKII

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=394027 FS418_RS03515 WP_142871698.1 811993..813264(-) (pilC) [Shewanella sp. YLB-09]
ATGGCTACTGCGGCAACAATTAAAAAAAGACAGACTAGAAATAAAAAAAATAACGCTAAAAGCCAGCCTAAAGTGTTTAC
CTTCGAATGGAAAGGTGTGAACCGTGATGGTCAAAAGACCTCTGGTGAACTTAAGGGTTCAACAGCTGCAGAAATTCGTA
GTCAATTAAAGTCTCAAGGGGTTAACCCTAAATCAGTTAAAAAACAGTCTGCATCCCTTTTCAAACTCGGCGATCCCAAA
ATTTCAGCCATGGATATCGCTATGTTCACCCGCCAAGTGGCAACTATGCTCTCGGCCGGTGTGCCTCTGGTAACAACCAT
AGAGATGCTAGGCCGTGGCCATGAAAAAGCCAAAGTGCGTGAGCTTTTAGCAACTATCTTAAACGATGTTCAATCGGGTA
TCCCCCTCTCCGATGCCCTACGCCCTCATAGAAAATACTTCGATGATCTCTATGTCGATCTCGTCGCAGCAGGTGAGCAT
TCAGGATCATTAGATGCCGTGTTTGATCGTATCGCCATGTACAGAGAGAAAGCCGAAGCATTAAAGTCAAAGATTAAAAA
AGCCATGTTCTATCCCGCTGCAGTTGTCGTTGTTGCCATAGGTGTAACCACTCTCTTACTATTATTCGTAGTCCCTCAAT
TTCAAGAAATATTTGCTGGATTCGGCGCTGAGCTGCCCGCTTTTACTCAATTAGTCATTGAGATATCAGAAGCACTACAG
GCCTCTTGGTATATCTTCGCTGTAGCAATTATTATTACTATAATCCTGTTTAAAAGGGCGCACCTTCACTCTCAAAAATT
CAGAGACCAAGTAGATGCTGCAATGTTAAAAATCCCTGCTATTGGTCCTATCCTACATAAAGCTGCCATGGCACGTTTTG
CACGGACTCTATCAACGACCTTTGCAGCGGGCGTGCCACTTATCGATGGCCTAGAGTCAGCAGCAGGAGCTTCTGGTAAT
GCAGTTTACCGCAAAGCATTAATAAAAGTTCGCAGCGAAGTCATGGCGGGCATGCAGATGAATGTCGCGATGCGAACCAC
TAAGCTGTTTCCGGATATGTTGATCCAGATGGTGATGATAGGCGAAGAATCGGGTGGCCTCGATGACATGCTCAACAAGG
TTGCCAACATCTATGAGATGCAAGTTGATGATGCAGTCGATGGTTTATCCAGCCTAATAGAACCTATCATGATGGTAGTG
ATTGGTACGCTAGTTGGCGGTTTAATTATTGCTATGTATCTTCCTATCTTCGAAATGGGTAAGATTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(89-212)

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.061

93.617

0.525
  pilC Legionella pneumophila strain ERS1305867

50.374

94.799

0.478
  pilC Acinetobacter baumannii D1279779

50.251

94.09

0.473
  pilC Acinetobacter baylyi ADP1

49.874

93.853

0.468
  pilC Vibrio cholerae strain A1552

46.851

93.853

0.44
  pilC Vibrio campbellii strain DS40M4

44.776

95.035

0.426
  pilG Neisseria meningitidis 44/76-A

41.791

95.035

0.397
  pilG Neisseria gonorrhoeae MS11

41.791

95.035

0.397

Multiple sequence alignment