Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FS418_RS03510 Genome accession   NZ_CP045427
Coordinates   811022..811933 (-) Length   303 a.a.
NCBI ID   WP_142871697.1    Uniprot ID   A0AAJ4AQD6
Organism   Shewanella sp. YLB-09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806022..816933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS418_RS03490 (FS418_03485) mutT 808929..809336 (-) 408 WP_142871693.1 8-oxo-dGTP diphosphatase MutT -
  FS418_RS03495 (FS418_03490) yacG 809340..809552 (-) 213 WP_142871694.1 DNA gyrase inhibitor YacG -
  FS418_RS03500 (FS418_03495) zapD 809638..810372 (-) 735 WP_142871695.1 cell division protein ZapD -
  FS418_RS03505 (FS418_03500) coaE 810381..810986 (-) 606 WP_142871696.1 dephospho-CoA kinase -
  FS418_RS03510 (FS418_03505) pilD 811022..811933 (-) 912 WP_142871697.1 A24 family peptidase Machinery gene
  FS418_RS03515 (FS418_03510) pilC 811993..813264 (-) 1272 WP_142871698.1 type II secretion system F family protein Machinery gene
  FS418_RS03520 (FS418_03515) pilB 813364..815073 (-) 1710 WP_142871699.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FS418_RS03525 (FS418_03520) - 815152..815550 (-) 399 WP_185965783.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 33730.94 Da        Isoelectric Point: 6.4811

>NTDB_id=394026 FS418_RS03510 WP_142871697.1 811022..811933(-) (pilD) [Shewanella sp. YLB-09]
MSEFITILSHNLWLFSAIAFTFAAVIGSFLNVVIHRFPVMMKREWQQECNLYLNEYHEQLIKPIADKLDKPIDEYPEKYN
LVVPGSACPKCKTDIKPWHNLPIIGWLMLKGKCASCNTSISARYPIIELLTGTAVAFLAYHYGPSWEFAFATLLTFVLIA
LTGIDLDEMLLPDQLTLPLLWLGLLINLNGTFTSPTDAVIGAAAGYMSLWTVFWAFKLITGKEGMGYGDFKLLAVLGAWF
GWQLLPLIILLSSLVGAVVGIALIVSKKLHQGNPIPFGPYIALAGWIAMIWGADINTWYLSTL

Nucleotide


Download         Length: 912 bp        

>NTDB_id=394026 FS418_RS03510 WP_142871697.1 811022..811933(-) (pilD) [Shewanella sp. YLB-09]
ATGTCAGAATTTATCACTATTTTGAGTCACAATTTGTGGCTCTTCAGCGCTATCGCTTTTACCTTTGCAGCCGTCATTGG
CAGCTTTCTTAATGTTGTTATACATCGCTTCCCGGTAATGATGAAAAGAGAGTGGCAACAAGAATGTAACCTGTACCTCA
ATGAATACCATGAACAACTGATTAAACCCATCGCAGATAAACTCGACAAACCGATTGATGAGTATCCTGAAAAGTATAAT
TTAGTCGTCCCTGGTTCCGCCTGCCCCAAATGTAAAACAGATATCAAGCCGTGGCATAATCTGCCAATCATCGGCTGGCT
AATGCTTAAGGGAAAGTGCGCCTCATGCAATACATCAATATCGGCACGCTATCCCATCATAGAACTATTAACAGGAACTG
CAGTTGCCTTCCTAGCCTATCACTATGGTCCTAGCTGGGAGTTTGCCTTTGCCACCCTGCTAACATTTGTACTGATAGCA
TTAACAGGCATTGATTTAGATGAGATGCTTCTGCCGGATCAATTAACACTACCTTTGCTTTGGTTAGGTTTACTCATTAA
TCTCAATGGTACTTTTACATCACCAACTGATGCCGTAATAGGTGCAGCAGCTGGCTATATGAGTTTGTGGACTGTCTTCT
GGGCCTTTAAGTTGATAACGGGTAAGGAGGGCATGGGTTATGGTGATTTTAAGCTACTTGCAGTGCTTGGTGCCTGGTTT
GGCTGGCAGTTGCTGCCACTGATTATTTTACTGTCATCCCTCGTCGGCGCAGTTGTTGGTATCGCACTTATCGTGAGTAA
GAAATTACATCAAGGTAACCCAATTCCATTCGGTCCATATATTGCCCTCGCCGGTTGGATTGCCATGATTTGGGGCGCCG
ATATAAACACTTGGTACCTTTCTACTCTGTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-142)

Type IV leader peptidase family (Peptidase_A24)

(153-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.027

96.37

0.492
  pilD Acinetobacter nosocomialis M2

49.007

99.67

0.488
  pilD Vibrio campbellii strain DS40M4

49.333

99.01

0.488
  pilD Acinetobacter baumannii D1279779

48.675

99.67

0.485
  pilD Neisseria gonorrhoeae MS11

47.44

96.7

0.459

Multiple sequence alignment