Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   GCU76_RS09210 Genome accession   NZ_CP045425
Coordinates   1752433..1753683 (+) Length   416 a.a.
NCBI ID   WP_017694898.1    Uniprot ID   A0AAP2M3Y6
Organism   Bacillus subtilis strain JAAA     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1747433..1758683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS09180 ymfH 1747523..1748809 (+) 1287 WP_003244823.1 pitrilysin family protein -
  GCU76_RS09185 efpI 1748864..1749592 (+) 729 WP_017694896.1 EF-P-5 aminopentanone reductase -
  GCU76_RS09190 ymfJ 1749673..1749930 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  GCU76_RS09195 - 1750060..1750851 (+) 792 WP_003220998.1 YmfK family protein -
  GCU76_RS09200 rodZ 1750918..1751784 (+) 867 WP_250533830.1 cell shape determination protein RodZ -
  GCU76_RS09205 pgsA 1751834..1752415 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GCU76_RS09210 cinA 1752433..1753683 (+) 1251 WP_017694898.1 competence/damage-inducible protein A Machinery gene
  GCU76_RS09215 recA 1753856..1754902 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  GCU76_RS09220 pbpX 1755070..1756245 (+) 1176 WP_017694899.1 serine hydrolase domain-containing protein -
  GCU76_RS09225 rny 1756521..1758083 (+) 1563 WP_152425441.1 ribonuclease Y -

Sequence


Protein


Download         Length: 416 a.a.        Molecular weight: 45526.78 Da        Isoelectric Point: 5.2478

>NTDB_id=393983 GCU76_RS09210 WP_017694898.1 1752433..1753683(+) (cinA) [Bacillus subtilis strain JAAA]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASTLFAGGVVCYTNDVKQNVLG
VKKDTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=393983 GCU76_RS09210 WP_017694898.1 1752433..1753683(+) (cinA) [Bacillus subtilis strain JAAA]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAACATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGACACGTTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.279

100

0.993

  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459

  cinA Streptococcus mitis SK321

45.694

100

0.459

  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457

  cinA Streptococcus mutans UA159

45.763

99.279

0.454

  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454

  cinA Streptococcus pneumoniae R6

45.215

100

0.454

  cinA Streptococcus pneumoniae D39

44.976

100

0.452

  cinA Streptococcus suis isolate S10

41.379

90.625

0.375


Multiple sequence alignment