Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FIU83_RS07440 Genome accession   NZ_CP045417
Coordinates   1636252..1637487 (-) Length   411 a.a.
NCBI ID   WP_152483465.1    Uniprot ID   -
Organism   Halomonas sp. THAF5a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631252..1642487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU83_RS07415 (FIU83_07415) - 1631920..1632615 (-) 696 WP_152483461.1 hypothetical protein -
  FIU83_RS07420 (FIU83_07420) dinB 1632753..1633799 (-) 1047 WP_152485288.1 DNA polymerase IV -
  FIU83_RS07425 (FIU83_07425) lexA 1633860..1634519 (-) 660 WP_152483462.1 transcriptional repressor LexA -
  FIU83_RS07430 (FIU83_07430) - 1634923..1635591 (+) 669 WP_152483463.1 TetR/AcrR family transcriptional regulator -
  FIU83_RS07435 (FIU83_07435) - 1635591..1636109 (+) 519 WP_152483464.1 L,D-transpeptidase -
  FIU83_RS07440 (FIU83_07440) pilC 1636252..1637487 (-) 1236 WP_152483465.1 type II secretion system F family protein Machinery gene
  FIU83_RS07445 (FIU83_07445) pilB 1637550..1639346 (-) 1797 WP_152483466.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FIU83_RS17760 - 1639745..1640092 (+) 348 WP_152483467.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FIU83_RS07455 - 1640409..1641262 (+) 854 WP_152483468.1 IS5 family transposase -
  FIU83_RS07460 (FIU83_07460) istA 1641618..1642372 (+) 755 Protein_1467 IS21 family transposase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45499.21 Da        Isoelectric Point: 10.0399

>NTDB_id=393878 FIU83_RS07440 WP_152483465.1 1636252..1637487(-) (pilC) [Halomonas sp. THAF5a]
MAMKPTRKQEKVKLYRWRWTGKGPNGRKIAGEIVATRRNEVESLLANQNIVVKSIRRKSGFGSGMGKIKPRDIMLFARQM
ATMIRAGVPVLQAFQVVAESLKKPAMSALVQELMNEVAAGASFSEALKRHPQHFDRLFANMVEAGEQSGSLDNMLERVAT
YKEKIESLKSRVKKALWYPAAVISVGFGVTALLLVKVVPQFESLFQGFGAELPAPTRMTLALSEFAQQYWWWGLLGIVAA
IFLLRHAMRRSETFRYRMHKLSLRIPVIGDILDKSSVARYSRTLATTFGAGVPLVEALDTAEGAAGNMVYEHAIAQVRED
VATGQQLNFAMRMTEQFPPLAVQMVGIGEEAGSLDAMLNRVADYYEEEVDNKVDTLTSLLEPFIIVILGVLVGGLVVSMY
LPIFELGSVIG

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=393878 FIU83_RS07440 WP_152483465.1 1636252..1637487(-) (pilC) [Halomonas sp. THAF5a]
ATGGCAATGAAACCCACGCGCAAGCAGGAGAAGGTCAAGCTCTACCGCTGGCGGTGGACGGGCAAGGGCCCCAACGGGCG
CAAGATCGCCGGCGAAATCGTCGCCACCCGGCGGAACGAGGTGGAGAGCCTACTGGCCAATCAGAATATTGTCGTCAAGA
GCATCCGCCGCAAGAGCGGTTTCGGCAGCGGCATGGGCAAGATCAAGCCCCGTGACATCATGCTCTTCGCCCGTCAGATG
GCCACCATGATCCGCGCCGGCGTCCCGGTGCTGCAGGCCTTCCAGGTGGTGGCGGAAAGTCTCAAGAAGCCCGCCATGAG
CGCACTCGTCCAGGAACTGATGAACGAGGTGGCGGCCGGGGCCAGCTTCTCCGAGGCGCTCAAGCGCCACCCTCAGCACT
TCGATCGGCTGTTCGCCAACATGGTGGAGGCCGGCGAGCAGTCCGGGTCGCTGGACAACATGCTCGAGCGTGTCGCCACC
TACAAGGAGAAGATCGAATCGCTCAAGAGCCGGGTCAAGAAGGCGCTCTGGTACCCGGCGGCGGTGATCTCGGTGGGGTT
CGGCGTGACCGCGCTGCTGCTTGTCAAGGTGGTGCCGCAGTTCGAGAGCCTGTTCCAGGGCTTCGGCGCCGAGCTGCCGG
CCCCGACCCGCATGACCCTCGCGCTCTCGGAGTTCGCCCAGCAATACTGGTGGTGGGGGCTGCTCGGCATCGTGGCCGCG
ATATTCCTGCTGCGTCATGCCATGCGGCGCTCCGAGACGTTTCGCTATCGCATGCACAAGCTGTCGCTACGCATTCCGGT
AATCGGCGACATCCTCGACAAGTCCTCGGTGGCGCGCTATTCGCGCACCCTGGCCACTACCTTCGGCGCCGGCGTGCCAC
TGGTGGAGGCACTTGATACCGCCGAGGGCGCGGCGGGCAACATGGTCTACGAGCACGCCATCGCCCAGGTCCGCGAGGAC
GTGGCCACCGGCCAGCAGCTGAATTTCGCCATGCGCATGACCGAGCAGTTCCCGCCACTGGCGGTGCAGATGGTGGGGAT
CGGTGAGGAAGCCGGCTCGCTGGACGCCATGCTCAACCGGGTGGCGGACTACTACGAGGAGGAAGTCGACAACAAGGTCG
ACACCCTGACCTCGCTGCTCGAGCCCTTCATCATCGTCATCCTCGGCGTGCTGGTCGGCGGCCTGGTGGTCTCGATGTAC
CTGCCGATCTTCGAGCTGGGCAGTGTGATCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.35

98.054

0.523
  pilC Acinetobacter baylyi ADP1

53.149

96.594

0.513
  pilC Acinetobacter baumannii D1279779

51.889

96.594

0.501
  pilC Legionella pneumophila strain ERS1305867

49.626

97.567

0.484
  pilC Vibrio cholerae strain A1552

44.717

99.027

0.443
  pilC Vibrio campbellii strain DS40M4

44.888

97.567

0.438
  pilG Neisseria meningitidis 44/76-A

41.687

98.054

0.409
  pilG Neisseria gonorrhoeae MS11

41.687

98.054

0.409

Multiple sequence alignment