Detailed information NTG0393686

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: FIU96_RS13060
• Genome accession: NZ_CP045367
• Coordinates: 2819802..2821019 (+)
• Length: 405 a.a.
• NCBI ID: WP_152438649.1
• Uniprot ID: -
• Organism: Marinobacter sp. THAF39
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2814802..2826019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU96_RS13045 (FIU96_13160)	-	2815238..2817142 (-)	1905	WP_152438647.1	tetratricopeptide repeat protein	-
FIU96_RS13050 (FIU96_13165)	pilA2	2817246..2817695 (-)	450	WP_323847456.1	pilin	Machinery gene
FIU96_RS13055 (FIU96_13170)	pilB	2818087..2819799 (+)	1713	WP_152438648.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FIU96_RS13060 (FIU96_13175)	pilC	2819802..2821019 (+)	1218	WP_152438649.1	type II secretion system F family protein	Machinery gene
FIU96_RS13065 (FIU96_13180)	pilD	2821107..2821982 (+)	876	WP_152438650.1	prepilin peptidase	Machinery gene
FIU96_RS13070 (FIU96_13185)	coaE	2822124..2822729 (+)	606	WP_152438651.1	dephospho-CoA kinase	-
FIU96_RS13075 (FIU96_13190)	-	2822812..2823810 (+)	999	WP_228715418.1	hypothetical protein	-
FIU96_RS13080 (FIU96_13195)	tsaA	2823812..2824561 (+)	750	WP_152438653.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44433.36 Da
• Isoelectric Point: 9.4057

>NTDB_id=393686 FIU96_RS13060 WP_152438649.1 2819802..2821019(+) (pilC) [Marinobacter sp. THAF39]
MAEKAQKLESYVWEGKDRKGNKTKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMAIRNDISSGTGFAASLRKHPKYFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
EILKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFESLFQGFGADLPVFTQFIIGISEWMQKWWFIVLLGIVGTIYLFK
ESKRRSQKFSDIVDKYVLKLPIVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAVMNIKNDVSSGT
QLQASMRQQDVFPVMAVQLTAIGEESGNLDDMLQKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVV

Nucleotide

• Length: 1218 bp

>NTDB_id=393686 FIU96_RS13060 WP_152438649.1 2819802..2821019(+) (pilC) [Marinobacter sp. THAF39]
ATGGCAGAAAAAGCGCAGAAGCTGGAATCGTATGTCTGGGAAGGCAAAGACAGAAAAGGCAACAAGACCAAAGGAGAGCT
GACGGGCTCAAACTTGGCTCTTGTTAAGGCTCAGCTACGTAAGCAGGGCATTATCCCAGACAAAGTGAAAAAGAAGCCCA
AGCCATTGTTTGGTGGCAGCAAGAAAATCACTCCGTTTGACATAGCGATGCTGACCCGACAGCTAGCCACAATGATGAAA
GCCGGTGTGCCTTTGGTGCAGAGCTTTGACATTGTTGCTGATGGTCTCGAGAACAAGGGTCTTCAAGAACTGGTCATGGC
CATCCGGAATGATATTTCCTCTGGTACAGGTTTCGCTGCATCCTTGCGTAAACATCCAAAATACTTTGACGATCTGTACT
GCAACCTTGTGGATTCTGGCGAGAAAGCAGGTGCACTTGAGCAGATGCTGGACCGTATTGCTACCTATCTTGAGAAAACG
GAAATTCTGAAGAAGAAGGTCAAAAAGGCGATGACCTACCCTATCGCCGTTATCGTAGTCGCGATTGTGGTTACAGCTAT
CCTGTTGGTGAAGGTAGTTCCGCAGTTCGAAAGCCTGTTCCAGGGCTTTGGAGCGGATTTGCCCGTGTTTACTCAGTTCA
TCATCGGTATATCTGAATGGATGCAGAAATGGTGGTTTATCGTTCTGCTTGGGATTGTAGGTACGATCTACTTATTCAAG
GAATCTAAGCGCCGATCCCAAAAATTCTCTGATATTGTCGATAAATACGTTTTGAAGCTGCCCATTGTTGGCGAAATTCT
GGATAAGTCTGCGGTTGCCAAGTTCGGCCGCGTGCTTTCTACTACGTTCGCAGCGGGTGTGCCTCTGGTAGATGCTCTGG
ACTCGGTAGCTGGTGCTACCGGGAATGCGGTTTATCGGGATGCGGTTATGAACATCAAGAATGATGTCTCCAGCGGTACG
CAACTACAGGCTTCAATGCGTCAGCAGGATGTGTTTCCGGTTATGGCCGTCCAGCTTACTGCTATCGGCGAAGAGTCCGG
CAATCTTGACGATATGCTGCAGAAAGTTGCGGAGCATTACGAGGCCGTTGTAGATGACATGGTAGACAACCTCACGGCAC
TGATGGAGCCGATGATTATGGCTGTCCTTGGTGTGCTTGTGGGTGGCTTGATCATCGGCATGTACCTGCCAATCTTCCAG
ATGGGGCAAGTGGTTTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (277-397)

• Type II secretion system (T2SS), protein F (T2SSF) (72-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	65.926	100	0.659
pilC	Acinetobacter baumannii D1279779	58.519	100	0.585
pilC	Acinetobacter baylyi ADP1	58.128	100	0.583
pilC	Legionella pneumophila strain ERS1305867	53.448	100	0.536
pilG	Neisseria gonorrhoeae MS11	42.963	100	0.43
pilG	Neisseria meningitidis 44/76-A	42.716	100	0.427
pilC	Vibrio campbellii strain DS40M4	39.163	100	0.393
pilC	Vibrio cholerae strain A1552	38.765	100	0.388