Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FIU99_RS00250 Genome accession   NZ_CP045355
Coordinates   56343..57458 (+) Length   371 a.a.
NCBI ID   WP_006957515.1    Uniprot ID   -
Organism   Vibrio sp. THAF64     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 51343..62458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU99_RS00230 (FIU99_00245) trkA 51838..53214 (-) 1377 WP_006957511.1 Trk system potassium transporter TrkA -
  FIU99_RS00235 (FIU99_00250) rsmB 53264..54544 (-) 1281 WP_006957512.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  FIU99_RS00240 (FIU99_00255) fmt 54601..55548 (-) 948 WP_006957513.1 methionyl-tRNA formyltransferase -
  FIU99_RS00245 (FIU99_00260) def 55571..56092 (-) 522 WP_006957514.1 peptide deformylase -
  FIU99_RS00250 (FIU99_00265) dprA 56343..57458 (+) 1116 WP_006957515.1 DNA-processing protein DprA Machinery gene
  FIU99_RS00255 (FIU99_00270) - 57461..57940 (+) 480 WP_006957516.1 DUF494 family protein -
  FIU99_RS00260 (FIU99_00275) - 57956..58540 (+) 585 WP_006957517.1 type I DNA topoisomerase -
  FIU99_RS00265 (FIU99_00280) - 58590..59723 (-) 1134 WP_006957518.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FIU99_RS00270 (FIU99_00285) purE 59728..60213 (-) 486 WP_006957519.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FIU99_RS00275 (FIU99_00290) - 60410..60967 (+) 558 WP_006957520.1 L-threonylcarbamoyladenylate synthase -
  FIU99_RS00280 (FIU99_00295) hemF 60989..61906 (+) 918 WP_006957521.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40420.17 Da        Isoelectric Point: 6.5843

>NTDB_id=393594 FIU99_RS00250 WP_006957515.1 56343..57458(+) (dprA) [Vibrio sp. THAF64]
MTKEELTAWLSLYFTPRIGPKTFQRLVAVDSPVNIIDSSPETLRRLGFSDSQLNYLQHRAAEDIEACFEWQAESSARTIL
PLSDQRYPALLKQADAAPAILFVEGQLESLSRPQMAIVGSRNASIDGLNTARSFATQLVNQDMVVTSGLALGVDGYAHDG
ALNGNGQTIAVLGCGLNSVYPARHKKLAQRIVQQGALVSEFHPNVKPKADNFPRRNRIISGLSLGVLVIEAAEKSGSLIT
ARYAMEQGREVFAIPGSIHHPHARGCNLLIKQGACLVQQVSDITDEIDSLIRWSDVNKPPVQSDLFEQIDCKEELPFPQL
LANVGSKATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=393594 FIU99_RS00250 WP_006957515.1 56343..57458(+) (dprA) [Vibrio sp. THAF64]
ATGACGAAAGAAGAACTGACGGCTTGGCTGAGCTTGTACTTTACGCCGCGGATTGGGCCCAAAACGTTTCAGCGTCTGGT
AGCGGTAGACTCTCCAGTTAACATCATTGACTCTTCACCCGAGACATTACGCCGTTTAGGCTTTTCCGACTCGCAACTGA
ATTATCTCCAACACCGAGCTGCCGAGGATATTGAGGCGTGTTTCGAGTGGCAAGCAGAATCAAGTGCCAGAACCATTCTA
CCTTTGAGTGATCAGCGTTATCCGGCACTACTGAAACAGGCTGACGCTGCGCCAGCAATACTGTTTGTTGAAGGTCAGCT
AGAGAGTCTATCTCGGCCACAAATGGCGATTGTGGGCAGTCGCAATGCCAGTATTGATGGGCTTAACACCGCACGCAGCT
TTGCAACCCAGTTGGTGAATCAAGACATGGTCGTGACCAGCGGCTTGGCGCTAGGCGTTGATGGTTATGCTCATGATGGG
GCACTCAATGGTAATGGCCAAACCATCGCCGTGCTCGGTTGTGGCTTAAATTCTGTGTATCCGGCACGGCATAAGAAGTT
AGCTCAACGAATCGTTCAACAAGGGGCGTTGGTGTCTGAGTTCCATCCTAATGTGAAGCCAAAAGCCGATAATTTTCCAC
GCCGAAATCGAATCATTAGTGGTTTGTCATTGGGCGTTTTAGTCATAGAAGCGGCAGAGAAAAGTGGCTCTCTGATCACC
GCTCGCTATGCGATGGAGCAAGGCCGCGAAGTGTTTGCGATTCCCGGCTCGATTCATCATCCCCATGCGAGAGGTTGTAA
CCTGTTGATAAAACAGGGTGCGTGTCTGGTTCAGCAGGTTTCTGACATAACCGATGAAATTGACAGTCTGATTCGCTGGT
CTGATGTTAATAAGCCGCCAGTGCAAAGCGATCTATTTGAACAAATTGATTGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.67

98.922

0.62
  dprA Vibrio cholerae strain A1552

57.951

100

0.58
  dprA Glaesserella parasuis strain SC1401

45.479

100

0.461
  dprA Legionella pneumophila strain ERS1305867

44.011

96.765

0.426
  dprA Neisseria meningitidis MC58

37.783

100

0.404
  dprA Neisseria meningitidis strain C311

37.783

100

0.404
  dprA Haemophilus influenzae Rd KW20

40.816

92.453

0.377
  dprA Acinetobacter baumannii D1279779

40.179

90.566

0.364
  dprA Acinetobacter baumannii strain A118

39.881

90.566

0.361

Multiple sequence alignment