Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FIV01_RS00320 Genome accession   NZ_CP045350
Coordinates   75151..76239 (+) Length   362 a.a.
NCBI ID   WP_246210409.1    Uniprot ID   -
Organism   Vibrio aquimaris strain THAF100     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 70151..81239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS00300 (FIV01_00305) trkA 70645..72021 (-) 1377 WP_152429234.1 Trk system potassium transporter TrkA -
  FIV01_RS00305 (FIV01_00310) rsmB 72063..73349 (-) 1287 WP_152429235.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  FIV01_RS00310 (FIV01_00315) fmt 73407..74354 (-) 948 WP_152429236.1 methionyl-tRNA formyltransferase -
  FIV01_RS00315 (FIV01_00320) def 74377..74898 (-) 522 WP_152431615.1 peptide deformylase -
  FIV01_RS00320 (FIV01_00325) dprA 75151..76239 (+) 1089 WP_246210409.1 DNA-processing protein DprA Machinery gene
  FIV01_RS00325 (FIV01_00330) - 76236..76715 (+) 480 WP_114787755.1 DUF494 family protein -
  FIV01_RS00330 (FIV01_00335) - 76721..77323 (+) 603 WP_152429238.1 type I DNA topoisomerase -
  FIV01_RS00335 (FIV01_00340) - 77347..78480 (-) 1134 WP_152429239.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FIV01_RS00340 (FIV01_00345) purE 78484..78969 (-) 486 WP_152429240.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FIV01_RS00345 (FIV01_00350) - 79166..79723 (+) 558 WP_152429241.1 L-threonylcarbamoyladenylate synthase -
  FIV01_RS00350 (FIV01_00355) hemF 79746..80663 (+) 918 WP_152429242.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39380.00 Da        Isoelectric Point: 6.0391

>NTDB_id=393553 FIV01_RS00320 WP_246210409.1 75151..76239(+) (dprA) [Vibrio aquimaris strain THAF100]
MYFTPRVGPKTFQKIVAIDSPSNIVPSSSQALSALGFNSRQIQYLKHQALKDVDECLEWQSNGISRYILTFDDLGYPEQL
KQIDSAPPVLFIEGELSGLQEPQIAIVGSRNASIDGLNLARNFAMQLARQDLVITSGMALGVDGYAHDGAMQVGGGTVAV
LGCGLNNIYPARHQELAQKIASQGALVSEFHPNAKPKAENFPRRNRIISGLSLGVLVVEAAEKSGSLITARYASEQGREV
FAIPGSIHHSQARGCNWLIKQGACLVQQVSDIIDEIDCLIRWSNFHPSKETTEAFEQIDCKEELPFPHLLANVGSKAIPV
DILASRTNIPVQDVMMQLLELELLGHVVAVSGGYIRKGRGEL

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=393553 FIV01_RS00320 WP_246210409.1 75151..76239(+) (dprA) [Vibrio aquimaris strain THAF100]
TTGTACTTTACACCAAGAGTTGGTCCTAAGACTTTTCAGAAAATTGTTGCTATTGATTCGCCCTCCAATATAGTCCCGTC
ATCTTCCCAAGCGCTAAGCGCGTTGGGTTTTAACTCTCGGCAAATTCAATATCTCAAGCATCAAGCGCTCAAAGACGTCG
ATGAGTGTCTTGAATGGCAATCCAATGGTATAAGCAGGTATATTCTAACCTTTGATGATCTTGGTTATCCTGAGCAACTA
AAACAAATAGACTCCGCGCCTCCAGTGCTTTTTATTGAAGGTGAACTCAGTGGCTTACAAGAGCCACAAATTGCCATCGT
CGGCAGCCGCAACGCCAGTATTGACGGTCTTAATCTTGCAAGAAATTTTGCTATGCAGTTGGCTAGGCAAGACTTGGTTA
TCACCAGTGGTATGGCATTAGGAGTGGATGGTTATGCTCATGATGGCGCTATGCAAGTAGGGGGAGGCACAGTGGCGGTT
TTAGGTTGTGGATTAAATAATATTTATCCCGCTCGTCATCAAGAGCTTGCGCAAAAAATTGCATCTCAGGGAGCTTTGGT
GTCTGAATTTCACCCCAATGCAAAGCCAAAAGCAGAGAATTTCCCTCGGCGCAATCGTATTATTAGCGGCTTGTCTTTAG
GTGTATTAGTTGTTGAAGCAGCGGAAAAAAGTGGATCGCTTATCACCGCTCGATACGCTAGCGAGCAAGGCCGGGAAGTT
TTTGCTATCCCAGGTTCTATCCATCACAGCCAAGCCCGTGGCTGTAATTGGTTGATAAAGCAGGGAGCCTGTTTGGTTCA
ACAGGTATCAGACATTATTGATGAAATAGATTGTTTGATACGTTGGTCTAATTTTCACCCATCGAAAGAGACGACGGAAG
CATTTGAACAAATTGATTGCAAAGAAGAATTGCCATTTCCTCACCTGTTAGCTAACGTAGGTAGTAAGGCTATACCTGTT
GATATTCTTGCAAGCAGGACCAATATACCTGTTCAAGATGTCATGATGCAGCTTTTAGAGCTTGAGCTCTTAGGGCACGT
TGTTGCAGTTTCTGGTGGCTATATTCGAAAGGGGAGGGGCGAGCTATGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(309-353)

DNA recombination-mediator protein A (DNA_processg_A)

(68-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

61.236

98.343

0.602
  dprA Vibrio cholerae strain A1552

58.611

99.448

0.583
  dprA Glaesserella parasuis strain SC1401

44.321

99.724

0.442
  dprA Legionella pneumophila strain ERS1305867

44.034

97.238

0.428
  dprA Neisseria meningitidis strain C311

37.565

100

0.401
  dprA Neisseria meningitidis MC58

37.565

100

0.401
  dprA Haemophilus influenzae Rd KW20

41.935

94.199

0.395
  dprA Acinetobacter baylyi ADP1

37.815

98.619

0.373
  dprA Acinetobacter baumannii D1279779

44.746

81.492

0.365

Multiple sequence alignment