Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FIV04_RS14800 Genome accession   NZ_CP045338
Coordinates   3253851..3254963 (-) Length   370 a.a.
NCBI ID   WP_152469480.1    Uniprot ID   A0A5P9BBV8
Organism   Vibrio sp. THAF190c     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3248851..3259963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS14770 (FIV04_14820) hemF 3249429..3250346 (-) 918 WP_152469476.1 oxygen-dependent coproporphyrinogen oxidase -
  FIV04_RS14775 (FIV04_14825) - 3250368..3250925 (-) 558 WP_152469477.1 L-threonylcarbamoyladenylate synthase -
  FIV04_RS14780 (FIV04_14830) purE 3251123..3251608 (+) 486 WP_032548673.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FIV04_RS14785 (FIV04_14835) - 3251614..3252744 (+) 1131 WP_152469478.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FIV04_RS14790 (FIV04_14840) - 3252787..3253359 (-) 573 WP_152469479.1 type I DNA topoisomerase -
  FIV04_RS14795 (FIV04_14845) - 3253372..3253848 (-) 477 WP_032548670.1 DUF494 family protein -
  FIV04_RS14800 (FIV04_14850) dprA 3253851..3254963 (-) 1113 WP_152469480.1 DNA-processing protein DprA Machinery gene
  FIV04_RS14805 (FIV04_14855) - 3254973..3256067 (-) 1095 WP_152469481.1 LysM peptidoglycan-binding domain-containing protein -
  FIV04_RS14810 (FIV04_14860) def 3256208..3256723 (+) 516 WP_032548665.1 peptide deformylase -
  FIV04_RS14815 (FIV04_14865) fmt 3256758..3257705 (+) 948 WP_150870647.1 methionyl-tRNA formyltransferase -
  FIV04_RS14820 (FIV04_14870) rsmB 3257794..3259074 (+) 1281 WP_152469482.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40131.99 Da        Isoelectric Point: 7.0660

>NTDB_id=393510 FIV04_RS14800 WP_152469480.1 3253851..3254963(-) (dprA) [Vibrio sp. THAF190c]
MTEQELVAWLRLSFIPKLGMKRLKRLLAIDSPLNIVNYSHEQLQSLGFSDSQITYLKLKTEPLVEECLSWQAKSANHHLV
THQCAAYPPSLRQIASAPSTLFVRGNITTLSDPQIAMVGSRNASLQGLQTAKAFAREFAQSGLIVTSGLALGIDGYAHDG
ALEGGGETFAVLGSGLDAIYPARHRKLAQRIEEQGALISEFRPSAKPRPENFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYALEQGREVFALPGSIHSPTSRGGNSLIKSGACLVQSAQDVLVEIKSLLDWSIDVQPSLFEAPTTDNENEQLPFPHLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELLGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=393510 FIV04_RS14800 WP_152469480.1 3253851..3254963(-) (dprA) [Vibrio sp. THAF190c]
ATGACTGAGCAAGAGTTGGTGGCGTGGTTGAGGTTGAGCTTTATCCCTAAGCTAGGAATGAAGCGCCTTAAGCGCTTACT
GGCTATCGACTCTCCACTTAATATTGTTAACTACTCACATGAACAGCTGCAGTCGCTTGGTTTCTCCGATTCTCAAATAA
CTTACCTTAAACTCAAAACAGAGCCACTGGTTGAAGAGTGTTTATCGTGGCAGGCGAAAAGTGCCAACCATCATCTTGTT
ACTCACCAGTGTGCCGCGTATCCACCAAGCCTGCGCCAGATAGCTAGCGCACCTAGTACATTGTTTGTGCGCGGTAATAT
CACTACACTCAGTGATCCTCAAATCGCGATGGTTGGCAGTCGCAATGCCAGTCTACAAGGATTACAAACAGCCAAAGCAT
TTGCTCGAGAGTTCGCGCAAAGCGGTTTGATTGTCACTAGTGGTTTAGCGTTGGGTATTGATGGATATGCTCATGATGGT
GCTCTAGAAGGAGGTGGTGAAACTTTCGCCGTGCTTGGTTCTGGGCTAGATGCTATCTATCCAGCCCGCCATCGTAAACT
GGCACAACGGATTGAAGAGCAAGGCGCGCTAATCTCTGAATTTCGTCCCTCAGCTAAACCTCGTCCTGAAAACTTCCCGC
GTCGCAATCGTATTATCAGTGGCTTGTCGCTAGGTACATTGGTGGTAGAGGCGGCAGAAAAGAGTGGTTCATTGATTACG
GCGCGCTACGCATTGGAACAAGGACGAGAAGTTTTTGCCTTGCCAGGCTCAATACACAGCCCAACTAGCCGTGGAGGGAA
CAGTTTAATTAAGTCGGGTGCTTGCTTAGTTCAGAGCGCTCAAGATGTGCTTGTTGAAATAAAAAGCCTGCTAGATTGGT
CTATTGATGTACAACCCAGTCTGTTTGAAGCGCCGACAACCGACAATGAAAATGAACAATTGCCATTTCCACATCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAAGTCATGATGCA
GCTCTTAGAGTTAGAACTTTTAGGGCATGTTGTTGCAGTTTCTGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9BBV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

65.684

100

0.662
  dprA Vibrio cholerae strain A1552

57.754

100

0.584
  dprA Glaesserella parasuis strain SC1401

46.4

100

0.47
  dprA Legionella pneumophila strain ERS1305867

44.444

97.297

0.432
  dprA Neisseria meningitidis MC58

38.539

100

0.414
  dprA Neisseria meningitidis strain C311

38.539

100

0.414
  dprA Haemophilus influenzae Rd KW20

45.509

90.27

0.411
  dprA Neisseria gonorrhoeae strain FA1090

37.722

100

0.403
  dprA Neisseria gonorrhoeae MS11

37.722

100

0.403

Multiple sequence alignment