Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | GB930_RS21725 | Genome accession | NZ_CP045311 |
| Coordinates | 4717609..4717929 (-) | Length | 106 a.a. |
| NCBI ID | WP_242762376.1 | Uniprot ID | - |
| Organism | Aeromonas dhakensis strain Aer_OnIF1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4712609..4722929
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GB930_RS21705 (GB930_21740) | - | 4712912..4713589 (-) | 678 | WP_242762374.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| GB930_RS21710 (GB930_21745) | - | 4713945..4714916 (+) | 972 | WP_005309570.1 | response regulator | - |
| GB930_RS21715 (GB930_21750) | - | 4714992..4716389 (-) | 1398 | WP_017783362.1 | peptide MFS transporter | - |
| GB930_RS21720 (GB930_21755) | galU | 4716603..4717514 (-) | 912 | WP_005309577.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GB930_RS21725 (GB930_21760) | comEA | 4717609..4717929 (-) | 321 | WP_242762376.1 | ComEA family DNA-binding protein | Machinery gene |
| GB930_RS21730 (GB930_21765) | cysQ | 4718096..4718866 (+) | 771 | WP_181969533.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| GB930_RS21735 (GB930_21770) | - | 4718944..4719240 (-) | 297 | WP_005309589.1 | YciI family protein | - |
| GB930_RS21740 (GB930_21775) | - | 4719265..4719828 (-) | 564 | WP_242762378.1 | septation protein A | - |
| GB930_RS21745 (GB930_21780) | - | 4719933..4721438 (-) | 1506 | WP_242762379.1 | pyridoxal-dependent decarboxylase | - |
| GB930_RS21750 (GB930_21785) | - | 4721658..4722293 (+) | 636 | WP_010636289.1 | hemolysin III family protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11156.99 Da Isoelectric Point: 9.5773
>NTDB_id=393404 GB930_RS21725 WP_242762376.1 4717609..4717929(-) (comEA) [Aeromonas dhakensis strain Aer_OnIF1]
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKAATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKAATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=393404 GB930_RS21725 WP_242762376.1 4717609..4717929(-) (comEA) [Aeromonas dhakensis strain Aer_OnIF1]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCAAAGCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACCGCGCTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAGCTTGCCGATGTCAGCGGTATCGGCCCGGCCACGCTGGAAGCAAATCGGGACATGATCATCGTCAAGTA
A
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCAAAGCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACCGCGCTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAGCTTGCCGATGTCAGCGGTATCGGCCCGGCCACGCTGGAAGCAAATCGGGACATGATCATCGTCAAGTA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae strain A1552 |
52.727 |
100 |
0.547 |
| comEA | Vibrio cholerae C6706 |
52.727 |
100 |
0.547 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.144 |
100 |
0.462 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
47.423 |
91.509 |
0.434 |
| comEA | Vibrio campbellii strain DS40M4 |
41 |
94.34 |
0.387 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
63.492 |
59.434 |
0.377 |
| comEA | Legionella pneumophila str. Paris |
40.816 |
92.453 |
0.377 |
| comEA | Legionella pneumophila strain ERS1305867 |
40.816 |
92.453 |
0.377 |
| comEA/celA/cilE | Streptococcus mitis NCTC 12261 |
51.316 |
71.698 |
0.368 |