Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GA636_RS04720 Genome accession   NZ_CP045135
Coordinates   971825..973963 (+) Length   712 a.a.
NCBI ID   WP_171502374.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 966825..978963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS04690 - 966942..967561 (+) 620 Protein_900 IS607 family transposase -
  GA636_RS04695 - 967558..968715 (+) 1158 WP_016659040.1 RNA-guided endonuclease InsQ/TnpB family protein -
  GA636_RS04700 pilM 968864..969886 (+) 1023 WP_160232596.1 pilus assembly protein PilM Machinery gene
  GA636_RS04705 pilN 969886..970521 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  GA636_RS04710 pilO 970518..971237 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  GA636_RS04715 pilP 971237..971764 (+) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  GA636_RS04720 pilQ 971825..973963 (+) 2139 WP_171502374.1 type IV pilus secretin PilQ family protein Machinery gene
  GA636_RS04725 aroK 974000..974542 (+) 543 WP_075167858.1 shikimate kinase AroK -
  GA636_RS04730 aroB 974565..975647 (+) 1083 WP_160232278.1 3-dehydroquinate synthase -
  GA636_RS04735 - 975660..976496 (+) 837 WP_160232279.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76827.94 Da        Isoelectric Point: 5.0549

>NTDB_id=392219 GA636_RS04720 WP_171502374.1 971825..973963(+) (pilQ) [Acinetobacter indicus strain XG01]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLVLDFDKAQQSLKQASI
PVATREASSVEVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAATPVAVQQTAQGISNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDTQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHL
LVGGSDTTLWNLREPEFDDERGGYTYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNS
INTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=392219 GA636_RS04720 WP_171502374.1 971825..973963(+) (pilQ) [Acinetobacter indicus strain XG01]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAGAGCTTAAAACAGGCCAGCATT
CCGGTTGCGACCCGGGAAGCCAGCTCGGTTGAGGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTTGAAGGTAATACTTTTATTCTTAAAATTAACAGCACTCAGGCAGCCGCAACACCAG
TAGCTGTACAGCAGACGGCTCAAGGCATATCGAATATCGGCTTTCAGCGTGGTGCAGAAGGGGAAGGTCAGGTGGTAATT
GACCTGGCAGGCAGCAATACCCCGGTCGATGTACAACAGCAAGGCAGTAAAATTATTGTCCGTACCTTGGGCAATAAAAT
TCCTGCACATCTGGCGCGCCGTTTAAACGTCAATGATTTTGCCACCCCGGTATCTACCATTGATACGCAAAATGATGGTG
GCAATGGGGTAATTACTATTCAGTCTGCCGGAAGCTATGAATATATGGCGTATCAGGCAGAAAATAAACTGACCATTAGC
CTGAAACGTCCGGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCGCTGGATATTATTTTAAAAACCAAGAATCTGGAT
AAACGCCGTAACGGCAATGTGATCTGGATTGCACCCGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCCAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGCTGCAAACCGAATATATCCAGTTAAATTATGCCAAGGCTGCTGATATTGAGAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGAGGCGGCACAAATTCGGGTTCTGGGGCAGATCCACTTGGTGATAGC
GTCGGTAGTCTGCTCAGCCCACGTGGTACGGTGTCGGTTGATCCACGAACCAACACCCTGATTATTAATGATACTGCACA
AAAAATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTATCGGTGAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCCACCACTGACTTCACCAAAGAGATGGGGGTCAAGTGGGGCATCCTGTCACAGGGTATCACGAATAATAACCATCTT
CTGGTCGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCGGAATTTGACGATGAGCGTGGTGGTTATACCTATGA
AATTGAACGTCCACAAAACTTGAATGTCGATTTGGGGGTCACCAGCCCAGGTGCGAGCCGGATTGCTTTTGGTCTCATCA
GCCTGTCTGACTTTATGCTGGATTTAGAACTGTCTGCCCTACAAGCTGATGGTTATGGTGAAGTGATTTCGACCCCGAAA
GTGCTGACTGCTGATAAGCAACAGGCCAAAGTGGCTTCAGGTACGCAGATTCCGTATCAGTCTGCTGAAGGAGGCGGTGT
CAATGCGGTATCCACCACAGAGTTTATTGATGCAACTTTAAGTCTGGATGTTACGCCAAGCATTACCCCGGATGGTAAAG
TGCAGATGAACCTGAATATCACCAGTGATAGTCCGGGAGCACCAACGCCGACCGGTCAGCTGACGATTAACAAAAACTCG
ATCAATACCAATGTACTGGTCGATAATGGTGAAACCGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGCCAATCAGCA
AACCAAAGTGCCATTCCTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(290-332)

AMIN domain (AMIN)

(40-121)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.593

100

0.777
  pilQ Acinetobacter baumannii strain A118

76.454

100

0.775
  comQ Acinetobacter baylyi ADP1

74.51

100

0.747
  pilQ Pseudomonas aeruginosa PAK

40.17

99.298

0.399
  pilQ Legionella pneumophila strain ERS1305867

38.472

99.298

0.382
  pilQ Legionella pneumophila strain Lp02

38.472

99.298

0.382

Multiple sequence alignment