Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   GA636_RS04700 Genome accession   NZ_CP045135
Coordinates   968864..969886 (+) Length   340 a.a.
NCBI ID   WP_160232596.1    Uniprot ID   A0A7S7AFT6
Organism   Acinetobacter indicus strain XG01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 963864..974886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS04685 ponA 964112..966688 (-) 2577 WP_160232276.1 penicillin-binding protein PBP1a -
  GA636_RS04690 - 966942..967561 (+) 620 Protein_900 IS607 family transposase -
  GA636_RS04695 - 967558..968715 (+) 1158 WP_016659040.1 RNA-guided endonuclease InsQ/TnpB family protein -
  GA636_RS04700 pilM 968864..969886 (+) 1023 WP_160232596.1 pilus assembly protein PilM Machinery gene
  GA636_RS04705 pilN 969886..970521 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  GA636_RS04710 pilO 970518..971237 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  GA636_RS04715 pilP 971237..971764 (+) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  GA636_RS04720 pilQ 971825..973963 (+) 2139 WP_171502374.1 type IV pilus secretin PilQ family protein Machinery gene
  GA636_RS04725 aroK 974000..974542 (+) 543 WP_075167858.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37488.78 Da        Isoelectric Point: 4.3343

>NTDB_id=392215 GA636_RS04700 WP_160232596.1 968864..969886(+) (pilM) [Acinetobacter indicus strain XG01]
MGVDISSTSVKLLELSVKNDRYWVESYALVPLSEGSVVEKNILNPEAVGDALERAFNLANTPTTAAALAIPTSMVISKTI
EMDADMTDDEREVQIRMDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRLENVESRCEAIELAGLTPKVADVES
FAIENAFKVFADTLPMGVNTIGVLDIGHTMTTLSVLKDNKIIYTREQVFGGKQLTQEIQNRYGLSFEEAGRAKKSRTLPD
DYDVEVLEPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFLQMGFSSKIDIKR
IESDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=392215 GA636_RS04700 WP_160232596.1 968864..969886(+) (pilM) [Acinetobacter indicus strain XG01]
ATAGGTGTAGATATTAGTTCTACTTCTGTTAAGTTATTGGAGCTCTCTGTAAAGAATGATCGTTACTGGGTGGAAAGTTA
CGCCTTGGTACCGCTCTCAGAGGGCAGTGTGGTTGAGAAAAATATTCTGAATCCTGAAGCTGTAGGGGATGCGCTCGAGC
GTGCCTTTAATTTGGCCAATACACCGACAACAGCTGCCGCTTTAGCGATTCCAACCTCAATGGTAATTAGCAAGACCATT
GAGATGGATGCCGATATGACGGATGACGAACGTGAAGTTCAAATCCGGATGGATGCAGAGCAATATATTCCTTTCCCATT
AGATGAAGTTAGCCTGGACTTTGAGGTGCTGCCTGATCGTCTGGCCAATCCAAACCGGGTCAATGTTTTGCTGGTGGCGA
CACGACTGGAAAATGTCGAGAGTCGCTGTGAAGCGATTGAACTGGCCGGTTTAACCCCAAAAGTGGCAGATGTCGAAAGC
TTTGCCATTGAAAATGCCTTTAAAGTCTTCGCCGATACCTTGCCGATGGGGGTAAATACCATTGGTGTGTTAGACATTGG
TCATACTATGACCACGCTGTCGGTACTCAAAGACAATAAAATTATCTATACCCGCGAGCAGGTCTTTGGTGGCAAGCAGC
TGACCCAGGAAATCCAGAACCGTTATGGTCTGTCCTTTGAAGAAGCCGGCCGCGCCAAGAAAAGCCGTACCTTGCCAGAT
GATTATGATGTTGAAGTGTTGGAGCCATTCCTTGAGGCGGTGGTGCAGCAGGCGGCACGTTCGCTGCAGTTCTTCTTCTC
CTCATCGCAGTTTAATGAAATTGACCATATTCTGCTGGCCGGTGGGAATGCCAATATTCCAGGCCTAGCCAAGCTACTAC
AGCAAAAACTGGGTTACCGCGTCACCATTGCCAATCCGTTTTTACAGATGGGTTTCTCCTCCAAAATTGATATTAAAAGA
ATTGAAAGCGATGCCTCTTCATTGATGGTGGCATGTGGCTTGGCATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(2-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7AFT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

84.412

100

0.844
  comM Acinetobacter nosocomialis M2

84.412

100

0.844
  comM Acinetobacter baylyi ADP1

78.824

100

0.788
  pilM Legionella pneumophila strain ERS1305867

41.813

100

0.421

Multiple sequence alignment