Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GA636_RS01460 Genome accession   NZ_CP045135
Coordinates   300050..301261 (+) Length   403 a.a.
NCBI ID   WP_160232118.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295050..306261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS01420 rimP 295497..296021 (-) 525 WP_005181784.1 ribosome maturation factor RimP -
  GA636_RS01445 secG 296890..297219 (-) 330 WP_016659654.1 preprotein translocase subunit SecG -
  GA636_RS01450 tpiA 297233..298024 (-) 792 WP_005181780.1 triose-phosphate isomerase -
  GA636_RS01455 pilB 298313..300019 (+) 1707 WP_075167609.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GA636_RS01460 pilC 300050..301261 (+) 1212 WP_160232118.1 type II secretion system F family protein Machinery gene
  GA636_RS01465 pilD 301261..302121 (+) 861 WP_005181774.1 prepilin peptidase Machinery gene
  GA636_RS01470 coaE 302132..302740 (+) 609 WP_075175011.1 dephospho-CoA kinase -
  GA636_RS01475 - 302737..303657 (-) 921 WP_016659657.1 DMT family transporter -
  GA636_RS01480 rlmB 303675..304427 (-) 753 WP_075167607.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GA636_RS01485 - 304533..304856 (-) 324 WP_075167606.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 44385.71 Da        Isoelectric Point: 9.9001

>NTDB_id=392203 GA636_RS01460 WP_160232118.1 300050..301261(+) (pilC) [Acinetobacter indicus strain XG01]
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIAAFLEA
KKRSKKFRDLLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVATGQQL
QFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLPIFQMG
SVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=392203 GA636_RS01460 WP_160232118.1 300050..301261(+) (pilC) [Acinetobacter indicus strain XG01]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGAAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGGAATACTTTTGCAGGCGCACTGCGTAAATATCCACAACATTTCGATA
ATCTGTTTTGCTCGCTGGTCGAATCCGGTGAACAGTCGGGTGCTCTAGAAACCATGCTGGACCGGGTGGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAGAAAATTAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTCACCATTATCCTGAT
GGTCAAAGTGGTACCGGTGTTTGAAGAACTCTTCACCTCTTTTGGTGCCGACTTACCAGCCTTCACCAAAATGGTGGTGA
ATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCCATTGCAGCTTTTCTGGAAGCC
AAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAAAGCACCGATTTTTGGTGATTTGGTGTATAA
GGCGATTATCGCGCGTTATAGTCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTAATTGATGCACTGGAATCCA
CTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCAGTAATGAAAATCCGTGAAGATGTCGCCACCGGTCAGCAGTTG
CAGTTTGCCATGCGGGTCACGGATAAATTCCCTTCGATGGCCGTGCAGATGGTTGCGATTGGTGAAGAATCCGGTGCGCT
GGATGCAATGCTGGATAAAGTCGCGACCCACTACGAAAACGAAGTCGATAACGCCGTTGATGGCTTAACCTCGATGATGG
AACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCAATCTTCCAAATGGGC
TCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-395)

Type II secretion system (T2SS), protein F (T2SSF)

(74-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.5

100

0.886
  pilC Acinetobacter baylyi ADP1

82.598

100

0.836
  pilC Pseudomonas stutzeri DSM 10701

59.705

100

0.603
  pilC Legionella pneumophila strain ERS1305867

52.099

100

0.524
  pilG Neisseria gonorrhoeae MS11

47.236

98.759

0.466
  pilG Neisseria meningitidis 44/76-A

47.236

98.759

0.466
  pilC Vibrio cholerae strain A1552

42.892

100

0.434
  pilC Vibrio campbellii strain DS40M4

42.079

100

0.422

Multiple sequence alignment