Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GA721_RS12670 | Genome accession | NZ_CP045131 |
| Coordinates | 2673108..2674334 (+) | Length | 408 a.a. |
| NCBI ID | WP_160243589.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain TQ18 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2668108..2679334
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GA721_RS12630 | rimP | 2668555..2669079 (-) | 525 | WP_005181784.1 | ribosome maturation factor RimP | - |
| GA721_RS12655 | secG | 2669948..2670277 (-) | 330 | WP_016659654.1 | preprotein translocase subunit SecG | - |
| GA721_RS12660 | tpiA | 2670291..2671082 (-) | 792 | WP_005181780.1 | triose-phosphate isomerase | - |
| GA721_RS12665 | pilB | 2671371..2673077 (+) | 1707 | WP_160243588.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GA721_RS12670 | pilC | 2673108..2674334 (+) | 1227 | WP_160243589.1 | type II secretion system F family protein | Machinery gene |
| GA721_RS12675 | pilD | 2674334..2675194 (+) | 861 | WP_160243590.1 | prepilin peptidase | Machinery gene |
| GA721_RS12680 | coaE | 2675205..2675813 (+) | 609 | WP_005181773.1 | dephospho-CoA kinase | - |
| GA721_RS12685 | - | 2675810..2676730 (-) | 921 | WP_016659657.1 | DMT family transporter | - |
| GA721_RS12690 | rlmB | 2676748..2677500 (-) | 753 | WP_005181769.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| GA721_RS12695 | - | 2677606..2677929 (-) | 324 | WP_005181767.1 | pyrimidine/purine nucleoside phosphorylase | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44895.36 Da Isoelectric Point: 9.9079
>NTDB_id=392186 GA721_RS12670 WP_160243589.1 2673108..2674334(+) (pilC) [Acinetobacter indicus strain TQ18]
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVALIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVALIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV
Nucleotide
Download Length: 1227 bp
>NTDB_id=392186 GA721_RS12670 WP_160243589.1 2673108..2674334(+) (pilC) [Acinetobacter indicus strain TQ18]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGTAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGCAATACCTTTGCTGGTGCACTGCGTAAATATCCGCAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACCGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCACTGATTGT
CACCATTATCCTGATGGTCAAAGTGGTACCGGTGTTTGAAGAACTCTTCAGCTCTTTTGGTGCCGACTTACCGGCCTTCA
CCAAGATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCGCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATCGCGCGTTATAGTCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTAATTG
ATGCACTGGAATCCACTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCAGTAATGAAAATCCGTGAAGATGTCGCC
ACCGGTCAGCAGTTACAGTTTGCCATGCGGGTCACGGATAAATTCCCTTCGATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCTACTCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGTAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGCAATACCTTTGCTGGTGCACTGCGTAAATATCCGCAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACCGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCACTGATTGT
CACCATTATCCTGATGGTCAAAGTGGTACCGGTGTTTGAAGAACTCTTCAGCTCTTTTGGTGCCGACTTACCGGCCTTCA
CCAAGATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCGCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATCGCGCGTTATAGTCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTAATTG
ATGCACTGGAATCCACTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCAGTAATGAAAATCCGTGAAGATGTCGCC
ACCGGTCAGCAGTTACAGTTTGCCATGCGGGTCACGGATAAATTCCCTTCGATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCTACTCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baumannii D1279779 |
88.48 |
100 |
0.885 |
| pilC | Acinetobacter baylyi ADP1 |
83.824 |
100 |
0.838 |
| pilC | Pseudomonas stutzeri DSM 10701 |
60.442 |
99.755 |
0.603 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.84 |
99.265 |
0.525 |
| pilG | Neisseria gonorrhoeae MS11 |
47.99 |
97.549 |
0.468 |
| pilG | Neisseria meningitidis 44/76-A |
47.99 |
97.549 |
0.468 |
| pilC | Vibrio cholerae strain A1552 |
43.382 |
100 |
0.434 |
| pilC | Vibrio campbellii strain DS40M4 |
42.822 |
99.02 |
0.424 |