Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GA721_RS12675 Genome accession   NZ_CP045131
Coordinates   2674334..2675194 (+) Length   286 a.a.
NCBI ID   WP_160243590.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2669334..2680194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA721_RS12655 secG 2669948..2670277 (-) 330 WP_016659654.1 preprotein translocase subunit SecG -
  GA721_RS12660 tpiA 2670291..2671082 (-) 792 WP_005181780.1 triose-phosphate isomerase -
  GA721_RS12665 pilB 2671371..2673077 (+) 1707 WP_160243588.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GA721_RS12670 pilC 2673108..2674334 (+) 1227 WP_160243589.1 type II secretion system F family protein Machinery gene
  GA721_RS12675 pilD 2674334..2675194 (+) 861 WP_160243590.1 prepilin peptidase Machinery gene
  GA721_RS12680 coaE 2675205..2675813 (+) 609 WP_005181773.1 dephospho-CoA kinase -
  GA721_RS12685 - 2675810..2676730 (-) 921 WP_016659657.1 DMT family transporter -
  GA721_RS12690 rlmB 2676748..2677500 (-) 753 WP_005181769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GA721_RS12695 - 2677606..2677929 (-) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32062.35 Da        Isoelectric Point: 7.8299

>NTDB_id=392187 GA721_RS12675 WP_160243590.1 2674334..2675194(+) (pilD) [Acinetobacter indicus strain TQ18]
MQEFIHYLIQHPTALYFVVGIFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKISLSQPASTCPKCHSP
IRWYQNIPVISWLLLRGKCGQCQNPISIRYPFIELLTAVCALTVVAVFGPTLQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTSASSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKDNQPFAFGPYIAIAGWIAFLWGDVIMKLYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=392187 GA721_RS12675 WP_160243590.1 2674334..2675194(+) (pilD) [Acinetobacter indicus strain TQ18]
ATGCAAGAATTCATTCATTATCTGATTCAACACCCAACTGCGCTGTATTTCGTAGTTGGGATTTTTAGTTTATGTATTGG
CAGTTTTCTGAATGTGGTGATTTACCGCACGCCAAAAATGATGGAACAGGAATGGCGCAATGACTGTCAAATGCTGCTGC
ATCCTGAACAGGCCATCATTGATGAAAGCAAAATCAGCCTCAGTCAGCCAGCCTCGACCTGTCCGAAATGCCACAGCCCG
ATTCGCTGGTATCAGAATATTCCAGTAATCAGCTGGCTGCTTCTACGTGGCAAATGTGGCCAATGCCAAAACCCGATCAG
TATTCGTTATCCTTTTATTGAACTGCTGACCGCAGTGTGTGCCTTAACCGTAGTCGCGGTTTTTGGCCCGACCCTGCAAA
TGCTGTTTGGCCTGGTGTTGACCTATGTGTTAATTGCCCTGACCTTTATTGATTTTGACACCCAGCTGCTGCCTGACCGC
TATACCCTCCCCCTGGCTGCACTCGGCTTGGGGGTGAACAGCTATGCCCTGTACACCTCCGCTAGCTCTGCCATTTGGGG
ATATATCATTGGCTTTTTATGTCTGTGGGTGGTGTATTACCTGTTTAAGCTGGTGACTGGCAAAGAAGGTATGGGCTATG
GCGATTTTAAATTGCTGGCCGCCTTAGGTGCCTGGATGGGCCCGCTGATGCTGCCGCTGATTGTGTTGCTATCTTCTCTG
GTTGGTGCAATCATTGGCATTATTTTGCTGAAAATCCGCAAAGATAACCAGCCTTTTGCCTTTGGCCCTTATATTGCCAT
TGCCGGCTGGATCGCCTTTTTGTGGGGTGATGTAATCATGAAGCTTTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80.351

99.65

0.801
  pilD Acinetobacter baumannii D1279779

80

99.65

0.797
  pilD Vibrio cholerae strain A1552

55.431

93.357

0.517
  pilD Vibrio campbellii strain DS40M4

53.184

93.357

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437

Multiple sequence alignment