Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   F9277_RS16785 Genome accession   NZ_CP045070
Coordinates   3426738..3427847 (-) Length   369 a.a.
NCBI ID   WP_152163767.1    Uniprot ID   -
Organism   Vibrio harveyi strain WXL538     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3421738..3432847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9277_RS16755 (F9277_16755) hemF 3422267..3423184 (-) 918 WP_017817571.1 oxygen-dependent coproporphyrinogen oxidase -
  F9277_RS16760 (F9277_16760) - 3423219..3423776 (-) 558 WP_050940538.1 L-threonylcarbamoyladenylate synthase -
  F9277_RS16765 (F9277_16765) purE 3423976..3424461 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  F9277_RS16770 (F9277_16770) - 3424466..3425599 (+) 1134 WP_005450972.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  F9277_RS16775 (F9277_16775) - 3425663..3426232 (-) 570 WP_005450974.1 type I DNA topoisomerase -
  F9277_RS16780 (F9277_16780) - 3426256..3426735 (-) 480 WP_005429833.1 DUF494 family protein -
  F9277_RS16785 (F9277_16785) dprA 3426738..3427847 (-) 1110 WP_152163767.1 DNA-processing protein DprA Machinery gene
  F9277_RS16790 (F9277_16790) - 3427831..3428925 (-) 1095 WP_152163768.1 LysM peptidoglycan-binding domain-containing protein -
  F9277_RS16795 (F9277_16795) def 3429064..3429582 (+) 519 WP_005450979.1 peptide deformylase -
  F9277_RS16800 (F9277_16800) fmt 3429616..3430563 (+) 948 WP_050937888.1 methionyl-tRNA formyltransferase -
  F9277_RS16805 (F9277_16805) rsmB 3430645..3431928 (+) 1284 WP_152163769.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39715.36 Da        Isoelectric Point: 6.0412

>NTDB_id=391686 F9277_RS16785 WP_152163767.1 3426738..3427847(-) (dprA) [Vibrio harveyi strain WXL538]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTAIDEEELPFPQLLA
NVGNEATSVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=391686 F9277_RS16785 WP_152163767.1 3426738..3427847(-) (dprA) [Vibrio harveyi strain WXL538]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGGCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACATCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.412

100

0.924
  dprA Vibrio cholerae strain A1552

58.378

100

0.585
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.474
  dprA Haemophilus influenzae Rd KW20

45

92.141

0.415
  dprA Legionella pneumophila strain ERS1305867

49.662

80.217

0.398
  dprA Neisseria meningitidis strain C311

37.275

100

0.393
  dprA Neisseria meningitidis MC58

37.275

100

0.393
  dprA Neisseria gonorrhoeae strain FA1090

35.659

100

0.374
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374

Multiple sequence alignment