Detailed information
Bioinformatically predicted
Overview
| Name | cinA | Type | Machinery gene |
| Locus tag | F8M46_RS04610 | Genome accession | NZ_CP044506 |
| Coordinates | 891164..892405 (+) | Length | 413 a.a. |
| NCBI ID | WP_014569352.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain BIO6870 | ||
| Function | facilitate localization of RecA (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 883248..932135 | 891164..892405 | within | 0 |
Gene organization within MGE regions
Location: 883248..932135
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F8M46_RS04580 (F8M46_04580) | - | 883746..886046 (+) | 2301 | WP_014569347.1 | DNA translocase FtsK | - |
| F8M46_RS04585 (F8M46_04585) | yfmF | 886055..887317 (+) | 1263 | WP_014569348.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| F8M46_RS04590 (F8M46_04590) | yfmH | 887314..888606 (+) | 1293 | WP_014569349.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| F8M46_RS04595 (F8M46_04595) | ymfI | 888606..889334 (+) | 729 | WP_014569350.1 | elongation factor P 5-aminopentanone reductase | - |
| F8M46_RS04600 (F8M46_04600) | - | 889421..890356 (+) | 936 | WP_005688668.1 | helix-turn-helix domain-containing protein | - |
| F8M46_RS04605 (F8M46_04605) | pgsA | 890353..890943 (+) | 591 | WP_014569351.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| F8M46_RS04610 (F8M46_04610) | cinA | 891164..892405 (+) | 1242 | WP_014569352.1 | competence/damage-inducible protein A | Machinery gene |
| F8M46_RS04615 (F8M46_04615) | recA | 892457..893509 (+) | 1053 | WP_005688187.1 | recombinase RecA | Machinery gene |
| F8M46_RS04625 (F8M46_04625) | rny | 894134..895705 (+) | 1572 | WP_005684479.1 | ribonuclease Y | - |
| F8M46_RS04630 (F8M46_04630) | - | 895794..896450 (-) | 657 | WP_029943817.1 | YigZ family protein | - |
| F8M46_RS04635 (F8M46_04635) | - | 896478..897743 (+) | 1266 | WP_014569356.1 | DEAD/DEAH box helicase | - |
| F8M46_RS04640 (F8M46_04640) | - | 897902..898420 (+) | 519 | WP_005688681.1 | ComF family protein | - |
| F8M46_RS04645 (F8M46_04645) | hpf | 898612..899169 (+) | 558 | WP_005684485.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| F8M46_RS04660 (F8M46_04660) | secA | 899752..902115 (+) | 2364 | WP_005684487.1 | preprotein translocase subunit SecA | - |
| F8M46_RS04665 (F8M46_04665) | prfB | 902257..903373 (+) | 1117 | WP_154241369.1 | peptide chain release factor 2 | - |
| F8M46_RS04670 (F8M46_04670) | ftsE | 903450..904136 (+) | 687 | WP_005684489.1 | cell division ATP-binding protein FtsE | - |
| F8M46_RS04675 (F8M46_04675) | ftsX | 904126..905013 (+) | 888 | WP_005684490.1 | permease-like cell division protein FtsX | - |
| F8M46_RS15390 | - | 905091..905228 (+) | 138 | WP_014569359.1 | hypothetical protein | - |
| F8M46_RS04680 (F8M46_04680) | - | 905284..906381 (+) | 1098 | WP_014569360.1 | PDZ domain-containing protein | - |
| F8M46_RS04685 (F8M46_04685) | - | 906378..907082 (+) | 705 | WP_005688690.1 | response regulator transcription factor | - |
| F8M46_RS04690 (F8M46_04690) | pnpS | 907075..908742 (+) | 1668 | WP_014569361.1 | two-component system histidine kinase PnpS | - |
| F8M46_RS04695 (F8M46_04695) | - | 908832..909698 (+) | 867 | WP_005684496.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| F8M46_RS04700 (F8M46_04700) | pstC | 909846..910769 (+) | 924 | WP_005684497.1 | phosphate ABC transporter permease subunit PstC | - |
| F8M46_RS04705 (F8M46_04705) | pstA | 910766..911650 (+) | 885 | WP_005684499.1 | phosphate ABC transporter permease PstA | - |
| F8M46_RS04710 (F8M46_04710) | pstB | 911721..912539 (+) | 819 | WP_005713669.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| F8M46_RS04715 (F8M46_04715) | pstB | 912549..913313 (+) | 765 | WP_005684501.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| F8M46_RS04720 (F8M46_04720) | phoU | 913324..914001 (+) | 678 | WP_005684502.1 | phosphate signaling complex protein PhoU | - |
| F8M46_RS04725 (F8M46_04725) | - | 914255..915133 (-) | 879 | WP_048653158.1 | IS3 family transposase | - |
| F8M46_RS04730 (F8M46_04730) | - | 915130..915858 (-) | 729 | WP_014569363.1 | helix-turn-helix domain-containing protein | - |
| F8M46_RS04735 (F8M46_04735) | liaX | 916427..917917 (+) | 1491 | WP_014569364.1 | daptomycin-sensing surface protein LiaX | - |
| F8M46_RS04740 (F8M46_04740) | - | 917929..918189 (+) | 261 | WP_005688700.1 | hypothetical protein | - |
| F8M46_RS04745 (F8M46_04745) | - | 918192..918527 (+) | 336 | WP_005684507.1 | phage holin family protein | - |
| F8M46_RS04750 (F8M46_04750) | hprK | 918794..919753 (+) | 960 | WP_005684508.1 | HPr(Ser) kinase/phosphatase | - |
| F8M46_RS04755 (F8M46_04755) | lgt | 919755..920582 (+) | 828 | WP_014569365.1 | prolipoprotein diacylglyceryl transferase | - |
| F8M46_RS04760 (F8M46_04760) | - | 920593..921648 (+) | 1056 | WP_014569366.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| F8M46_RS04765 (F8M46_04765) | trxB | 921714..922661 (+) | 948 | WP_005684511.1 | thioredoxin-disulfide reductase | - |
| F8M46_RS04770 (F8M46_04770) | - | 922913..924640 (+) | 1728 | WP_014569367.1 | phospho-sugar mutase | - |
| F8M46_RS04775 (F8M46_04775) | - | 925100..925747 (+) | 648 | WP_014569368.1 | YfbR-like 5'-deoxynucleotidase | - |
| F8M46_RS04780 (F8M46_04780) | uvrB | 926018..928033 (+) | 2016 | WP_005688715.1 | excinuclease ABC subunit UvrB | - |
| F8M46_RS04785 (F8M46_04785) | uvrA | 928214..931108 (+) | 2895 | WP_014569369.1 | excinuclease ABC subunit UvrA | - |
| F8M46_RS04790 (F8M46_04790) | - | 931310..931849 (+) | 540 | WP_014569370.1 | HdeD family acid-resistance protein | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 44472.12 Da Isoelectric Point: 7.2504
>NTDB_id=390665 F8M46_RS04610 WP_014569352.1 891164..892405(+) (cinA) [Lacticaseibacillus rhamnosus strain BIO6870]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLSEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLSEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
Nucleotide
Download Length: 1242 bp
>NTDB_id=390665 F8M46_RS04610 WP_014569352.1 891164..892405(+) (cinA) [Lacticaseibacillus rhamnosus strain BIO6870]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCGAGCTATCATCAACAGGTTGTTGGGGATAATGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGTGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCCTGCAAGCGATGTATCCCCAAGGCGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCGATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGACTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCCCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGTCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATTGATGCC
CGTCAGCTATCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCGAGCTATCATCAACAGGTTGTTGGGGATAATGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGTGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCCTGCAAGCGATGTATCCCCAAGGCGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCGATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGACTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCCCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGTCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATTGATGCC
CGTCAGCTATCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| cinA | Streptococcus mitis SK321 |
52.019 |
100 |
0.53 |
| cinA | Streptococcus mitis NCTC 12261 |
52.019 |
100 |
0.53 |
| cinA | Streptococcus pneumoniae TIGR4 |
51.544 |
100 |
0.525 |
| cinA | Streptococcus pneumoniae R6 |
51.069 |
100 |
0.521 |
| cinA | Streptococcus pneumoniae Rx1 |
51.069 |
100 |
0.521 |
| cinA | Streptococcus mutans UA159 |
51.442 |
100 |
0.518 |
| cinA | Streptococcus pneumoniae D39 |
50.831 |
100 |
0.518 |
| cinA | Bacillus subtilis subsp. subtilis str. 168 |
44.66 |
99.758 |
0.446 |
| cinA | Streptococcus suis isolate S10 |
42.593 |
91.525 |
0.39 |