Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FSC11_RS01215 Genome accession   NZ_CP044483
Coordinates   262293..263522 (-) Length   409 a.a.
NCBI ID   WP_163164688.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 257293..268522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS01190 (FSC11_01195) - 258660..258983 (+) 324 WP_004810087.1 pyrimidine/purine nucleoside phosphorylase -
  FSC11_RS01195 (FSC11_01200) rlmB 259136..259885 (+) 750 WP_004810085.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FSC11_RS01200 (FSC11_01205) - 259892..260815 (+) 924 WP_034424053.1 DMT family transporter -
  FSC11_RS01205 (FSC11_01210) coaE 260832..261431 (-) 600 WP_163164686.1 dephospho-CoA kinase -
  FSC11_RS16375 (FSC11_01215) pilD 261433..262293 (-) 861 WP_108619239.1 prepilin peptidase Machinery gene
  FSC11_RS01215 (FSC11_01220) pilC 262293..263522 (-) 1230 WP_163164688.1 type II secretion system F family protein Machinery gene
  FSC11_RS01220 (FSC11_01225) pilB 263554..265263 (-) 1710 WP_163164690.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FSC11_RS01225 (FSC11_01230) tpiA 265546..266337 (+) 792 WP_163164692.1 triose-phosphate isomerase -
  FSC11_RS01230 (FSC11_01235) secG 266351..266680 (+) 330 WP_004810073.1 preprotein translocase subunit SecG -
  FSC11_RS01260 (FSC11_01265) rimP 267744..268268 (+) 525 WP_163164694.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44954.46 Da        Isoelectric Point: 9.9952

>NTDB_id=390236 FSC11_RS01215 WP_163164688.1 262293..263522(-) (pilC) [Acinetobacter schindleri strain HZE30-1]
MASVKKGQMMPTFTYEGVDRKGIKIKGEIPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMRVVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=390236 FSC11_RS01215 WP_163164688.1 262293..263522(-) (pilC) [Acinetobacter schindleri strain HZE30-1]
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTCACCTATGAAGGGGTAGACCGTAAAGGTATAAAGATTAAAGG
GGAAATACCTGCACGTAACCTCGCCTTGGCCAAGGTCACGTTGCGTAAGCAGGGTATCAGTATCAAGAGTATTCGAGAAA
AAAAGAAGAATATTCTTGAAGGCCTGATGAAGAAAAAAGTGACCACACTGGATATCACCATTTTTACCCGTCAGCTTGCT
ACCATGATGAAAGCCGGTGTACCACTCGTACAAGGCTTTGAAATTGTGGCGGAAGGCCTTGAAAATCCTTCAATGCGCGT
GGTTGTACTCGGGATTAAAGGTGAGGTTGAAGGCGGAAATACCTTTGCAGGTGCACTGCGCAAGTATCCTCAATACTTTG
ATAAGCTATTCTGTTCGCTGGTTGAATCCGGTGAACAATCCGGTGCTTTAGAGACCATGCTGGATCGTGTTGCGATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAGAAAATTAAAAAAGCCATGAAATACCCAGCAACAGTGGTTGTTGTTGCAATTAT
TGTTACGATTATTTTGATGGTTAAAGTCGTTCCAGTTTTCCAGGATCTCTTCTCGTCATTTGGTGCAGACTTGCCAGCAT
TTACAAAAATGGTAGTCAATATGTCTGAATGGATGCAGAAATACTGGTTCCTGCTGATCATTGGGATTGGTGTAGTCATT
ACTGCTTTCCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGTGATTTCTTGGATAAGGCTGCACTAAAAGCACCTATCTT
CGGTGATCTGGTTTATAAAGCGATTATTGCTCGTTATAGTCGTACTCTGGCAACGACTTTTGCTGCTGGTGTTCCATTAA
TTGATGCACTGGAATCAACTGCAGGCGCTACAAATAATGTAGTTTATGAAGATGCGGTAATGAAAATTCGTGAGGATGTT
GCTACTGGCCAACAACTGCAATTCGCCATGCGTGTTACCAATAAGTTTCCTTCTATGGCCGTGCAAATGGTCTCGATTGG
TGAAGAATCTGGTGCACTAGATGCCATGCTGGATAAAGTTGCGACCCATTATGAAAATGAAGTCGACAATGCCGTTGATG
GTTTGACCTCCATGATGGAGCCATTGATTATGGCCGTTCTTGGTGTGCTTGTAGGTGGTCTTGTTATTGCAATGTACCTG
CCAATTTTCCAGATGGGTTCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.189

99.511

0.888
  pilC Acinetobacter baylyi ADP1

82.555

99.511

0.822
  pilC Pseudomonas stutzeri DSM 10701

62.217

97.066

0.604
  pilC Legionella pneumophila strain ERS1305867

54.02

97.311

0.526
  pilG Neisseria gonorrhoeae MS11

46.734

97.311

0.455
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

42.647

99.756

0.425
  pilC Vibrio campbellii strain DS40M4

41.235

99.022

0.408

Multiple sequence alignment