Detailed information NTG0390269

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FSC11_RS16375
• Genome accession: NZ_CP044483
• Coordinates: 261433..262293 (-)
• Length: 286 a.a.
• NCBI ID: WP_108619239.1
• Uniprot ID: -
• Organism: Acinetobacter schindleri strain HZE30-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 256433..267293

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FSC11_RS01185 (FSC11_01190)	recN	256580..258241 (-)	1662	WP_163164684.1	DNA repair protein RecN	-
FSC11_RS01190 (FSC11_01195)	-	258660..258983 (+)	324	WP_004810087.1	pyrimidine/purine nucleoside phosphorylase	-
FSC11_RS01195 (FSC11_01200)	rlmB	259136..259885 (+)	750	WP_004810085.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
FSC11_RS01200 (FSC11_01205)	-	259892..260815 (+)	924	WP_034424053.1	DMT family transporter	-
FSC11_RS01205 (FSC11_01210)	coaE	260832..261431 (-)	600	WP_163164686.1	dephospho-CoA kinase	-
FSC11_RS16375 (FSC11_01215)	pilD	261433..262293 (-)	861	WP_108619239.1	prepilin peptidase	Machinery gene
FSC11_RS01215 (FSC11_01220)	pilC	262293..263522 (-)	1230	WP_163164688.1	type II secretion system F family protein	Machinery gene
FSC11_RS01220 (FSC11_01225)	pilB	263554..265263 (-)	1710	WP_163164690.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FSC11_RS01225 (FSC11_01230)	tpiA	265546..266337 (+)	792	WP_163164692.1	triose-phosphate isomerase	-
FSC11_RS01230 (FSC11_01235)	secG	266351..266680 (+)	330	WP_004810073.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31968.18 Da
• Isoelectric Point: 8.0564

>NTDB_id=390269 FSC11_RS16375 WP_108619239.1 261433..262293(-) (pilD) [Acinetobacter schindleri strain HZE30-1]
MQDLILYFTQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQLFLHPDQPIIDESKLTLSKPASTCPKCHTP
IRWYQNIPVISWLALRGKCANCQNPISARYPFIEILTAVCALTVLAVFGPTVQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYAIYTSPTSAIWGYIIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLVVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=390269 FSC11_RS16375 WP_108619239.1 261433..262293(-) (pilD) [Acinetobacter schindleri strain HZE30-1]
ATGCAAGATCTTATTTTATATTTCACTCAAAACCCGACTGCGCTCTATATTGCAGTCGGGCTTTTTAGTCTCTGTATCGG
TAGTTTCCTGAATGTCGTAATTTACCGCACCCCTAAAATGATGGAACAGGAATGGCGTAACGACTGCCAGCTGTTTTTAC
ACCCTGATCAACCGATCATTGATGAAAGCAAGCTCACATTAAGCAAACCTGCGTCGACCTGTCCAAAATGTCATACACCA
ATTCGCTGGTATCAAAATATCCCCGTGATCAGCTGGCTGGCTCTTCGCGGCAAATGTGCGAATTGTCAAAATCCAATTAG
TGCCCGTTATCCATTCATTGAAATTCTAACAGCAGTTTGTGCATTGACCGTTTTGGCTGTATTTGGTCCTACAGTACAAA
TGTTGTTCGGTCTGGTGCTGACTTATATTCTCATTGCACTAACCTTTATTGACTTTGATACCCAGCTGCTTCCAGATCGC
TATACCCTTCCACTTGCAGCTTTAGGCTTAGGGGTGAATAGCTATGCAATTTACACCTCACCAACTTCAGCCATCTGGGG
TTATATCATTGGCTTTCTGTGTTTATGGGTCGTGTACTACCTGTTCAAAATAGTAACTGGTAAAGAAGGCATGGGCTATG
GTGATTTTAAATTGCTGGCTGCACTAGGTGCCTGGATGGGACCGTTAATGTTGCCACTAGTTGTATTATTGTCATCACTC
GTCGGTGCAATCATTGGCATTATCCTGCTAAAAGTGCGTAAGGAAAATCAGCCTTTTGCTTTTGGTCCCTATATTGCCAT
TGCCGGCTGGATCGCTTTCCTGTGGGGCGAGCAGATTATGAAAGTCTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80.702	99.65	0.804
pilD	Acinetobacter baumannii D1279779	80.351	99.65	0.801
pilD	Vibrio campbellii strain DS40M4	52.128	98.601	0.514
pilD	Vibrio cholerae strain A1552	54.887	93.007	0.51
pilD	Neisseria gonorrhoeae MS11	47.253	95.455	0.451