Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FSC02_RS13820 Genome accession   NZ_CP044445
Coordinates   2874625..2876763 (-) Length   712 a.a.
NCBI ID   WP_171521979.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CMG3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2869625..2881763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC02_RS13805 (FSC02_13860) - 2872092..2872928 (-) 837 WP_163170442.1 hypothetical protein -
  FSC02_RS13810 (FSC02_13865) aroB 2872941..2874023 (-) 1083 WP_163170443.1 3-dehydroquinate synthase -
  FSC02_RS13815 (FSC02_13870) aroK 2874046..2874588 (-) 543 WP_075167858.1 shikimate kinase AroK -
  FSC02_RS13820 (FSC02_13875) pilQ 2874625..2876763 (-) 2139 WP_171521979.1 type IV pilus secretin PilQ Machinery gene
  FSC02_RS13825 (FSC02_13880) pilP 2876824..2877351 (-) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  FSC02_RS13830 (FSC02_13885) pilO 2877351..2878070 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  FSC02_RS13835 (FSC02_13890) pilN 2878067..2878702 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  FSC02_RS13840 (FSC02_13895) pilM 2878702..2879760 (-) 1059 WP_005180518.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76720.87 Da        Isoelectric Point: 5.2241

>NTDB_id=390060 FSC02_RS13820 WP_171521979.1 2874625..2876763(-) (pilQ) [Acinetobacter indicus strain CMG3-2]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPSQPAAYQLEQPSRLVLDFDKAQQTLKQASI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAATPVAVQQTAQGVSNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVIIIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHL
LVGGSDTTLWNLREPEKDDDTGGWKYEIERPQNLNVDLGVTSAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNS
INTNVLVNNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=390060 FSC02_RS13820 WP_171521979.1 2874625..2876763(-) (pilQ) [Acinetobacter indicus strain CMG3-2]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCACAGGTCAGCAT
TACTAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCATCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAAACCTTAAAACAGGCCAGCATT
CCGGTTGCAACCCGGGAAGCCAGCTCGGTTGATGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTCAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTCGAAGGCAATACTTTTATTCTTAAAATTAACAGCACTCAGGCAGCTGCAACACCAG
TAGCTGTACAGCAGACGGCTCAAGGCGTATCAAATATTGGCTTCCAGCGCGGTGCAGAAGGGGAAGGTCAGGTGGTAATT
GACCTGGCAGGCAGCAATACCCCGGTCGATGTGCAACAGCAAGGCAGTAAAATTATTGTCCGTACTTTGGGCAATAAAAT
TCCTGCGCATCTGGCACGCCGTTTAAACGTCAATGATTTTGCCACGCCTGTATCTACCATTGATGCGCAAAATGATGGTG
GTAATGGGGTGATTATCATTCAGTCTGCCGGAAGCTATGAATATATGGCGTATCAGGCGGAAAATAAACTGACCATCAGT
CTGAAACGTCCGGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGCCGTGTGCTGCAGTTACTGGCGGATTTTACCGGAATTAATATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCGCTGGATATTATTTTAAAAACCAAGAATCTGGAT
AAACGCCGTAACGGCAATGTGATCTGGATTGCACCCGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCCAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGCTGCAAACCGAATATATTCAGTTAAATTATGCCAAGGCTGCCGATATTGAGAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGAGGCGGCACAAATTCGGGTTCAGGGGCAGATCCACTTGGTGATAGC
GTCGGTAGTCTGCTCAGCCCACGTGGTACGGTGTCAGTTGATCCACGAACCAACACCCTGATTATAAATGATACTGCACA
AAAGATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTATCGGTGAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCCACCACTGACTTCACCAAAGAGATGGGGGTGAAGTGGGGCATCTTGTCACAAGGGATTACCAACAATAATCACTTG
TTAGTCGGTGGTAGTGATACGACCTTGTGGAACTTGCGTGAACCAGAAAAAGATGATGATACGGGCGGTTGGAAGTATGA
AATTGAACGTCCGCAAAACCTGAATGTCGATTTAGGAGTGACCAGTGCAGGTGCTAGCCGCATTGCCTTTGGTTTAATCA
GTTTATCTGACTTTATGCTGGATTTAGAACTGTCTGCATTACAAGCTGATGGTTATGGTGAAGTAATTTCGACCCCGAAA
GTGCTGACTGCTGACAAGCAGCAGGCCAAAGTGGCTTCAGGTACGCAGATCCCGTATCAGTCTGCTGAAGGTGGTGGTGT
CAATGCGGTGTCTACAACAGAGTTTATTGACGCTACGCTCAGTCTGGACGTAACGCCAAGCATTACCCCGGATGGTAAAG
TGCAGATGAACCTGAATATCACCAGTGATAGCCCGGGAGCACCAACCCCAACCGGTCAGCTGACGATTAACAAAAACTCG
ATCAATACCAATGTACTGGTCAATAATGGTGAAACCGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGCCAATCAGCA
AACCAAAGTGCCATTCCTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCAGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(41-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)

Secretin and TonB N terminus short domain (STN)

(290-332)

Bacterial type II and III secretion system protein (Secretin)

(546-704)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.731

100

0.778
  pilQ Acinetobacter baumannii strain A118

76.593

100

0.777
  comQ Acinetobacter baylyi ADP1

74.37

100

0.746
  pilQ Pseudomonas aeruginosa PAK

40.368

99.157

0.4
  pilQ Legionella pneumophila strain ERS1305867

38.375

100

0.385
  pilQ Legionella pneumophila strain Lp02

38.375

100

0.385

Multiple sequence alignment