Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   FSC02_RS13830 Genome accession   NZ_CP044445
Coordinates   2877351..2878070 (-) Length   239 a.a.
NCBI ID   WP_005180513.1    Uniprot ID   N9KYM2
Organism   Acinetobacter indicus strain CMG3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2872351..2883070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC02_RS13810 (FSC02_13865) aroB 2872941..2874023 (-) 1083 WP_163170443.1 3-dehydroquinate synthase -
  FSC02_RS13815 (FSC02_13870) aroK 2874046..2874588 (-) 543 WP_075167858.1 shikimate kinase AroK -
  FSC02_RS13820 (FSC02_13875) pilQ 2874625..2876763 (-) 2139 WP_171521979.1 type IV pilus secretin PilQ Machinery gene
  FSC02_RS13825 (FSC02_13880) pilP 2876824..2877351 (-) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  FSC02_RS13830 (FSC02_13885) pilO 2877351..2878070 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  FSC02_RS13835 (FSC02_13890) pilN 2878067..2878702 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  FSC02_RS13840 (FSC02_13895) pilM 2878702..2879760 (-) 1059 WP_005180518.1 pilus assembly protein PilM Machinery gene
  FSC02_RS13845 (FSC02_13900) ponA 2879932..2882508 (+) 2577 WP_163170445.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27087.71 Da        Isoelectric Point: 5.1311

>NTDB_id=390062 FSC02_RS13830 WP_005180513.1 2877351..2878070(-) (pilO) [Acinetobacter indicus strain CMG3-2]
MSLDQYEEMNQDPVAAPKKKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAFLGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVGNTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=390062 FSC02_RS13830 WP_005180513.1 2877351..2878070(-) (pilO) [Acinetobacter indicus strain CMG3-2]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATCCTGTTGCTGCGCCAAAGAAAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATTA
TTATTTTAATTGCCTTCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAACTTGCAGCAATATCAGGCGCAGTTACAGGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTCAACGTTA
CGGGCGTGAATTCAGGCTTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCATGCTTTTGGTTCTTTTGTGAGCGGTACAGCCGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACTATTACTGCCGGTGAAAACAAGGAAAAGAAAACCGATATTCCACAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGGGAATACCGATGCACAGGCCGGTAATAGTACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KYM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.748

99.582

0.695
  comO Acinetobacter baylyi ADP1

67.213

100

0.686

Multiple sequence alignment