Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LPB220_RS08925 Genome accession   NZ_CP044230
Coordinates   1728780..1729277 (-) Length   165 a.a.
NCBI ID   WP_003008622.1    Uniprot ID   V8BCW4
Organism   Streptococcus sp. LPB0220     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1723780..1734277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS08905 (LPB220_08910) - 1724361..1725038 (+) 678 WP_031576885.1 DUF1129 domain-containing protein -
  LPB220_RS08910 (LPB220_08915) - 1725529..1727604 (-) 2076 WP_031576886.1 ATP-binding cassette domain-containing protein -
  LPB220_RS08915 (LPB220_08920) - 1727869..1728390 (-) 522 WP_031576887.1 GNAT family N-acetyltransferase -
  LPB220_RS08920 (LPB220_08925) rpsR 1728499..1728738 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  LPB220_RS08925 (LPB220_08930) ssbA 1728780..1729277 (-) 498 WP_003008622.1 single-stranded DNA-binding protein Machinery gene
  LPB220_RS08930 (LPB220_08935) rpsF 1729298..1729588 (-) 291 WP_003005040.1 30S ribosomal protein S6 -
  LPB220_RS08935 (LPB220_08940) - 1729893..1730945 (+) 1053 WP_031576918.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  LPB220_RS08940 (LPB220_08945) - 1730932..1731834 (+) 903 WP_031576920.1 phosphodiester glycosidase family protein -
  LPB220_RS08945 (LPB220_08950) - 1731815..1732222 (+) 408 WP_037585728.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17919.68 Da        Isoelectric Point: 4.9371

>NTDB_id=389009 LPB220_RS08925 WP_003008622.1 1728780..1729277(-) (ssbA) [Streptococcus sp. LPB0220]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRAAREGHAGGGYSSGNGGFAGNATPSFGGSEPSNAAPNFGREENPFGANPMDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=389009 LPB220_RS08925 WP_003008622.1 1728780..1729277(-) (ssbA) [Streptococcus sp. LPB0220]
ATGATTAACAATGTTGTACTTGTCGGTCGTATGACCCGTGATGCTGAACTTCGCTACACTCCAAGCAATCAAGCAGTTGC
TACTTTCAGCCTAGCTGTCAACCGCAACTTCAAGAGTCAAAATGGAGAGCGCGAAGCCGATTTCATCAACTGTGTGATCT
GGCGTCAGCAAGCAGAAAACTTAGCCAACTGGGCTAAGAAAGGTGCTTTGATTGGGATTACCGGTCGCATTCAAACACGT
AATTACGAAAACCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCAGACAGCTTCCAACTATTGGAAAGCCGTGC
AGCACGCGAAGGGCATGCAGGTGGTGGCTATTCATCAGGCAACGGTGGTTTTGCTGGAAATGCAACCCCAAGCTTTGGTG
GATCTGAACCAAGCAATGCAGCGCCAAACTTTGGTCGTGAAGAAAATCCATTTGGAGCGAATCCAATGGATATCTCAGAC
GACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BCW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.857

100

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.606
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.137

70.909

0.37
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.061

0.364
  ssbB/cilA Streptococcus pneumoniae R6

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis SK321

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis NCTC 12261

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae Rx1

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae D39

51.282

70.909

0.364

Multiple sequence alignment