Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BATR1942_RS06055 Genome accession   NC_014639
Coordinates   1221670..1222920 (+) Length   416 a.a.
NCBI ID   WP_003328869.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1216670..1227920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS06025 (BATR1942_06235) yfmH 1216753..1218039 (+) 1287 WP_003328875.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BATR1942_RS06030 (BATR1942_06240) ymfI 1218096..1218824 (+) 729 WP_003328874.1 elongation factor P 5-aminopentanone reductase -
  BATR1942_RS06035 (BATR1942_06245) - 1218905..1219162 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  BATR1942_RS06040 (BATR1942_06250) - 1219292..1220083 (+) 792 WP_003328872.1 DUF3388 domain-containing protein -
  BATR1942_RS06045 (BATR1942_06255) rodZ 1220102..1221019 (+) 918 WP_003328871.1 cell shape determination protein RodZ -
  BATR1942_RS06050 (BATR1942_06260) pgsA 1221070..1221651 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BATR1942_RS06055 (BATR1942_06265) cinA 1221670..1222920 (+) 1251 WP_003328869.1 competence/damage-inducible protein A Machinery gene
  BATR1942_RS06060 (BATR1942_06270) recA 1223092..1224135 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  BATR1942_RS06065 (BATR1942_06275) - 1224420..1225649 (+) 1230 WP_003328866.1 serine hydrolase domain-containing protein -
  BATR1942_RS06070 (BATR1942_06280) rny 1225907..1227469 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45240.45 Da        Isoelectric Point: 4.7532

>NTDB_id=38766 BATR1942_RS06055 WP_003328869.1 1221670..1222920(+) (cinA) [Bacillus atrophaeus 1942]
MELGKKAEIIAVGSELLLGQIANTNAQFISKELAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLDDEAFQSIEDYFKKTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLTEHEARLYMLLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKACKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQQFGAVSKECAGELASGIQRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGIFADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=38766 BATR1942_RS06055 WP_003328869.1 1221670..1222920(+) (cinA) [Bacillus atrophaeus 1942]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCGGTCGGTTCAGAGCTTTTACTCGGTCAGATCGCCAATACCAACGCTCA
ATTTATCAGTAAAGAGCTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGACAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGGGGGCTCGGACCGACGAAAGATGATTTA
ACAAAAGAAACAATCGCAAATGTGCTGGGCCGTCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAAAACAAAGCGTACGATGTCACCGAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGACGTATTGGCCAATA
AATTCGGCATGGCGCCGGGGATGCTGACAGAGCACGAAGCCCGTCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAGCCGCTTCTTCTAGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATCGGCGAGTCCCAGCTGGAAGCTGATTTAGAAGATATTATTGATGCACAGACCAATCCGACAATTG
CTCCTTTGGCTGCGGACGGAGAAGTGACGCTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACAGAGCGGCTGCTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGGTATGATGATACATCTCTTGTCAAAGAGCT
TTCAAAAGCGTGCAAGGAAAAAGGAATGACTCTTTCTTCAGCGGAGAGCTTTACAGGCGGTCTGTTCGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCAGTTCGGAGCAGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGGGATTCAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGACATGTTT
TTATCGGCATTTTCGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGC
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.663

100

0.897
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

42.287

90.385

0.382

Multiple sequence alignment