Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FOB45_RS21820 Genome accession   NZ_CP044086
Coordinates   3139454..3141577 (-) Length   707 a.a.
NCBI ID   WP_167517291.1    Uniprot ID   -
Organism   Pseudomonas luteola strain FDAARGOS_637     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3134454..3146577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB45_RS21805 (FOB45_21805) - 3136162..3137766 (-) 1605 WP_150348045.1 AAA family ATPase -
  FOB45_RS21810 (FOB45_21810) aroB 3137777..3138880 (-) 1104 WP_150348046.1 3-dehydroquinate synthase -
  FOB45_RS21815 (FOB45_21815) aroK 3138930..3139448 (-) 519 WP_037030744.1 shikimate kinase AroK -
  FOB45_RS21820 (FOB45_21820) pilQ 3139454..3141577 (-) 2124 WP_167517291.1 type IV pilus secretin PilQ Machinery gene
  FOB45_RS21825 (FOB45_21825) pilP 3141590..3142114 (-) 525 WP_010797033.1 type 4a pilus biogenesis lipoprotein PilP -
  FOB45_RS21830 (FOB45_21830) pilO 3142111..3142734 (-) 624 WP_010797032.1 type 4a pilus biogenesis protein PilO -
  FOB45_RS21835 (FOB45_21835) - 3142731..3143318 (-) 588 WP_010797031.1 PilN domain-containing protein -
  FOB45_RS21840 (FOB45_21840) comM 3143318..3144382 (-) 1065 WP_019363985.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 75793.02 Da        Isoelectric Point: 7.0285

>NTDB_id=387574 FOB45_RS21820 WP_167517291.1 3139454..3141577(-) (pilQ) [Pseudomonas luteola strain FDAARGOS_637]
MLHKTILQRVSGKSALTLAILLSGICPSLLLAADLKALNVASLPGDRVELKLSFDQPVTAPKGYTIEQPARIALDLPGVN
NKLGVRNKELGSGNARSVTVVEAGDRTRLIVNLTALAPYSTRVQGNDLFVVIGGDQAARTTSASVPAPSLPRSGAAQAPA
PATNPAGRVFSSVPRLAGKAIRNIDFKRGDDGEGNVIIDLSETGISPDIQEQGGKIRLNFGKTQLPDALRVRLDVKDFAT
PVQFVNASSQAGDTVITIEPTGVYDYLAYQTDNKLTISVKPLTAKEKEQRAAERFTYTGEKLSLNFQDIDVRSVLQLIAD
FTGLNLVASDTVQGNITLRLQNVPWDQALDLVLKTKGLDKRQIGNVLLIAPADEIAARERQELESQKQIQELAPLRRELI
QVNYAKAADMAKLFQSVTKADAGQSERGSITVDDRTNSIIAYQTQDRLDELRRIVSQLDIPVRQVMIEARIVEANVNYNK
QLGVNWSGSRSGNGNFTISGGAGSTTGTSSPFVDLGVGSATSGIGIGFLTGSTTLDLQLSAMEATGNGEIVSQPKVVTSD
KETAKILRGTEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVNKDAPDYQNRLDNGAPPISKNEVNAKVL
VADGETIVIGGVFSNTQSKSTSKVPLLGDVPYVGRLFRRDSVTDEKVELLVFLTPRIMNNQAIAVGR

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=387574 FOB45_RS21820 WP_167517291.1 3139454..3141577(-) (pilQ) [Pseudomonas luteola strain FDAARGOS_637]
ATGTTGCACAAAACTATTCTACAAAGGGTCTCAGGGAAGAGCGCCCTCACGCTGGCCATACTCTTGAGCGGAATCTGTCC
CTCTTTGCTGCTGGCGGCAGATCTCAAGGCCTTGAACGTGGCCTCTTTGCCGGGCGACAGAGTCGAACTCAAACTATCGT
TCGATCAGCCAGTAACAGCCCCCAAGGGCTATACCATTGAGCAACCTGCGCGCATCGCTTTGGATCTGCCTGGCGTTAAT
AACAAGCTAGGCGTTCGCAACAAGGAGTTGGGATCGGGGAATGCCAGAAGCGTTACCGTAGTCGAGGCGGGTGACCGCAC
GCGTCTTATCGTGAATCTGACTGCATTGGCGCCTTACTCGACCCGCGTTCAGGGTAACGACCTGTTCGTTGTCATTGGCG
GCGACCAGGCTGCTCGCACGACTAGTGCTTCTGTCCCGGCACCATCCTTGCCGCGCTCCGGTGCTGCGCAAGCCCCAGCG
CCTGCAACCAACCCTGCCGGCCGTGTCTTTTCCAGCGTGCCGAGATTGGCTGGGAAAGCCATCAGGAATATCGACTTCAA
GCGAGGTGATGACGGAGAAGGTAACGTTATCATTGACCTTTCAGAAACAGGTATCAGCCCTGACATACAGGAGCAGGGTG
GAAAGATTCGTCTTAACTTCGGCAAGACGCAGCTCCCTGATGCTCTACGTGTTCGGCTTGACGTCAAAGACTTTGCTACG
CCAGTACAGTTTGTAAACGCCTCAAGTCAGGCTGGTGACACGGTCATTACAATTGAGCCTACAGGCGTATATGACTATCT
GGCCTACCAGACAGATAACAAGCTGACCATTAGCGTCAAGCCACTGACTGCCAAGGAAAAGGAACAGCGTGCCGCTGAGC
GTTTCACCTATACCGGTGAAAAATTGTCTTTGAATTTCCAAGATATCGATGTTCGCTCGGTCCTTCAGTTAATTGCTGAC
TTCACCGGTTTGAACCTGGTGGCCAGTGACACTGTACAAGGCAACATCACGCTGCGCCTGCAGAACGTGCCGTGGGATCA
AGCGCTTGACCTTGTTCTGAAAACCAAGGGACTCGACAAGCGACAAATAGGCAACGTGCTGTTGATTGCGCCAGCGGATG
AGATTGCGGCGCGTGAGCGCCAGGAATTGGAGTCACAAAAGCAGATTCAGGAGCTGGCGCCGCTACGCAGAGAGCTGATC
CAGGTTAATTACGCCAAGGCTGCCGATATGGCCAAGCTGTTCCAGTCGGTTACTAAGGCTGATGCCGGACAAAGCGAGCG
TGGCTCTATCACTGTCGATGATCGAACCAATAGCATCATTGCTTACCAGACCCAAGATCGCCTGGATGAGCTAAGACGAA
TTGTCTCTCAGCTCGATATTCCGGTTCGTCAGGTGATGATCGAGGCGAGGATCGTTGAGGCAAACGTCAACTACAACAAA
CAGCTAGGTGTTAACTGGTCAGGTTCTCGGTCTGGCAATGGCAACTTTACTATCAGTGGAGGCGCTGGCTCTACTACTGG
GACGTCTTCACCTTTTGTAGATTTGGGTGTAGGTAGTGCAACGTCCGGTATTGGGATCGGGTTCTTGACGGGCAGTACTA
CTTTGGATCTTCAGTTGTCTGCCATGGAGGCTACTGGTAATGGTGAGATAGTCTCTCAACCCAAGGTAGTAACGTCTGAT
AAAGAAACAGCAAAAATCTTGCGTGGTACCGAGATTCCTTATCAGGAGGCCAGTTCGAGCGGTGCAACAAGTACCTCCTT
TAAGGAAGCGGCGCTTTCGTTAGAGGTAACGCCTCAGATCACGCCTGATAATCGAATTATCATGGAAGTTAAGGTGAATA
AGGATGCACCTGACTATCAGAATCGCCTGGATAATGGCGCTCCGCCTATTTCAAAAAACGAGGTGAATGCCAAAGTACTA
GTGGCTGATGGTGAAACTATCGTAATCGGGGGCGTTTTCTCGAATACTCAAAGCAAGTCGACGAGTAAAGTACCTTTATT
GGGCGATGTTCCCTATGTCGGTCGCCTATTTAGACGCGACTCGGTTACGGATGAAAAAGTAGAGCTGCTTGTCTTCCTCA
CTCCGCGTATCATGAACAACCAAGCTATTGCCGTTGGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(541-698)

Secretin and TonB N terminus short domain (STN)

(325-371)

AMIN domain (AMIN)

(47-131)

Bacterial type II/III secretion system short domain (Secretin_N)

(399-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.379

100

0.752
  comQ Acinetobacter baylyi ADP1

40.986

100

0.412
  pilQ Acinetobacter baumannii D1279779

39.944

100

0.405
  pilQ Acinetobacter baumannii strain A118

39.804

100

0.403
  pilQ Legionella pneumophila strain Lp02

38.743

96.747

0.375
  pilQ Legionella pneumophila strain ERS1305867

38.743

96.747

0.375

Multiple sequence alignment