Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FOB75_RS12470 Genome accession   NZ_CP044062
Coordinates   2467797..2468909 (-) Length   370 a.a.
NCBI ID   WP_025578089.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2462797..2473909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS12440 (FOB75_12440) hemF 2463258..2464175 (-) 918 WP_045607943.1 oxygen-dependent coproporphyrinogen oxidase -
  FOB75_RS12445 (FOB75_12445) - 2464223..2464780 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  FOB75_RS12450 (FOB75_12450) purE 2464980..2465465 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FOB75_RS12455 (FOB75_12455) - 2465470..2466603 (+) 1134 WP_065765059.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FOB75_RS12460 (FOB75_12460) - 2466667..2467236 (-) 570 WP_150334476.1 type I DNA topoisomerase -
  FOB75_RS12465 (FOB75_12465) - 2467315..2467794 (-) 480 WP_005461440.1 DUF494 family protein -
  FOB75_RS12470 (FOB75_12470) dprA 2467797..2468909 (-) 1113 WP_025578089.1 DNA-processing protein DprA Machinery gene
  FOB75_RS12475 (FOB75_12475) - 2468893..2469987 (-) 1095 WP_150334477.1 LysM peptidoglycan-binding domain-containing protein -
  FOB75_RS12480 (FOB75_12480) def 2470126..2470644 (+) 519 WP_025632358.1 peptide deformylase -
  FOB75_RS12485 (FOB75_12485) fmt 2470678..2471625 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  FOB75_RS12490 (FOB75_12490) rsmB 2471706..2472989 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39899.56 Da        Isoelectric Point: 6.4129

>NTDB_id=387293 FOB75_RS12470 WP_025578089.1 2467797..2468909(-) (dprA) [Vibrio parahaemolyticus strain FDAARGOS_667]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=387293 FOB75_RS12470 WP_025578089.1 2467797..2468909(-) (dprA) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGTAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTGGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373

Multiple sequence alignment