Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F1E05_RS19285 Genome accession   NZ_CP043929
Coordinates   4346811..4348031 (-) Length   406 a.a.
NCBI ID   WP_150051379.1    Uniprot ID   -
Organism   Methylomonas rhizoryzae strain GJ1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4341811..4353031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1E05_RS19250 - 4341881..4342105 (+) 225 WP_150051365.1 sulfurtransferase TusA family protein -
  F1E05_RS19255 argJ 4342128..4343342 (+) 1215 WP_150051367.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  F1E05_RS19260 - 4343343..4344314 (+) 972 WP_150051369.1 Nudix family hydrolase -
  F1E05_RS19265 yacG 4344286..4344489 (-) 204 WP_150051371.1 DNA gyrase inhibitor YacG -
  F1E05_RS19270 zapD 4344492..4345262 (-) 771 WP_150051373.1 cell division protein ZapD -
  F1E05_RS19275 coaE 4345259..4345870 (-) 612 WP_150051375.1 dephospho-CoA kinase -
  F1E05_RS19280 pilD 4345872..4346738 (-) 867 WP_150051377.1 A24 family peptidase Machinery gene
  F1E05_RS19285 pilC 4346811..4348031 (-) 1221 WP_150051379.1 type II secretion system F family protein Machinery gene
  F1E05_RS19290 pilB 4348035..4349747 (-) 1713 WP_150051381.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F1E05_RS19295 - 4349846..4350640 (-) 795 WP_150051383.1 response regulator -
  F1E05_RS19300 - 4350647..4352089 (-) 1443 WP_150051385.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44324.13 Da        Isoelectric Point: 7.1156

>NTDB_id=386602 F1E05_RS19285 WP_150051379.1 4346811..4348031(-) (pilC) [Methylomonas rhizoryzae strain GJ1]
MAKESDQIDFLWEGLDKQGKKTGGLFSAKSEAVARTELRKSGVRVIKIKPKPKPLFGPKKQKITSADIAVFARQLATMLE
AGVPLVQSFDIIGKGHDNASMSEMLLSIKADIEGGDTLAQALAKKNLYFDDLFCNLVNAGEQAGVLESLLDKIATYKEKT
ESIRKKVKKALTYPIAVLVVACIVTAVLLIFVVPVFEDLFKGFGADLPAFTQFVIELSRWIQEWWWAIVGVIGASGYTFS
FFKKRSRPFNHFLDRTLLKIPVVGMILEKSAIARFARTLSTMSAAGVPLVEALVSVAGACGNILFYDGVMKMRDDVATGQ
QLQFSMIQTGLFPNMVIQMVAIGEESGSIDSMLDKVADFYEEEVDNLVDNLSSLMEPIIMSVLGVLVGGLIVAMYLPIFK
LGAAVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=386602 F1E05_RS19285 WP_150051379.1 4346811..4348031(-) (pilC) [Methylomonas rhizoryzae strain GJ1]
ATGGCAAAAGAAAGCGATCAAATTGATTTTCTTTGGGAGGGCTTGGATAAACAAGGCAAAAAGACCGGGGGGCTTTTTAG
CGCTAAAAGTGAAGCGGTTGCACGGACGGAGTTAAGAAAGTCCGGGGTTAGGGTCATTAAAATCAAGCCCAAGCCAAAGC
CGTTGTTCGGGCCCAAAAAACAGAAAATAACCAGTGCTGATATTGCGGTTTTTGCCCGGCAATTAGCCACTATGTTGGAA
GCTGGAGTGCCCTTGGTGCAATCTTTCGACATTATCGGCAAAGGTCACGATAACGCGAGTATGTCTGAAATGTTGTTGTC
CATTAAGGCCGATATTGAAGGTGGCGATACCTTAGCGCAGGCACTGGCTAAAAAGAATCTATATTTCGACGATTTGTTTT
GCAATCTGGTGAACGCAGGCGAGCAAGCCGGTGTGTTGGAATCGTTATTGGATAAGATTGCAACCTACAAAGAAAAAACC
GAGTCCATTCGTAAAAAAGTAAAAAAGGCTTTAACTTATCCGATAGCCGTCTTGGTGGTTGCGTGCATTGTGACTGCGGT
GCTTTTAATTTTTGTGGTACCGGTTTTCGAAGATTTGTTTAAAGGGTTTGGCGCCGACTTGCCCGCTTTTACGCAATTCG
TCATTGAATTGTCCCGATGGATACAAGAATGGTGGTGGGCTATTGTCGGTGTGATAGGAGCTTCCGGTTACACCTTTAGT
TTTTTTAAAAAACGCTCTCGGCCTTTTAATCACTTTTTGGATAGAACGTTGTTGAAAATACCCGTGGTGGGAATGATTTT
GGAAAAATCCGCTATTGCGCGGTTTGCCAGGACGCTATCGACCATGTCCGCCGCAGGTGTTCCTCTGGTAGAAGCGTTGG
TTTCCGTTGCAGGAGCGTGCGGTAACATTTTGTTCTACGACGGCGTGATGAAAATGCGCGATGACGTGGCAACCGGTCAG
CAATTGCAATTCTCTATGATTCAGACGGGGTTATTTCCTAATATGGTGATCCAAATGGTAGCCATTGGCGAAGAGTCCGG
TTCCATCGATAGTATGTTGGATAAAGTTGCCGATTTCTACGAAGAGGAGGTGGATAATTTGGTCGATAATCTCAGCAGTT
TGATGGAACCTATCATTATGTCGGTGCTCGGGGTTTTAGTCGGGGGGCTTATCGTGGCGATGTATTTGCCTATTTTCAAA
TTGGGGGCGGCGGTTGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

61.307

98.03

0.601
  pilC Pseudomonas stutzeri DSM 10701

57.935

97.783

0.567
  pilC Acinetobacter baumannii D1279779

55.416

97.783

0.542
  pilC Acinetobacter baylyi ADP1

52.897

97.783

0.517
  pilG Neisseria meningitidis 44/76-A

47.487

98.03

0.466
  pilG Neisseria gonorrhoeae MS11

47.355

97.783

0.463
  pilC Vibrio cholerae strain A1552

42

98.522

0.414
  pilC Vibrio campbellii strain DS40M4

40.547

99.015

0.401

Multiple sequence alignment