Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | F1E05_RS19290 | Genome accession | NZ_CP043929 |
| Coordinates | 4348035..4349747 (-) | Length | 570 a.a. |
| NCBI ID | WP_150051381.1 | Uniprot ID | - |
| Organism | Methylomonas rhizoryzae strain GJ1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4343035..4354747
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1E05_RS19260 | - | 4343343..4344314 (+) | 972 | WP_150051369.1 | Nudix family hydrolase | - |
| F1E05_RS19265 | yacG | 4344286..4344489 (-) | 204 | WP_150051371.1 | DNA gyrase inhibitor YacG | - |
| F1E05_RS19270 | zapD | 4344492..4345262 (-) | 771 | WP_150051373.1 | cell division protein ZapD | - |
| F1E05_RS19275 | coaE | 4345259..4345870 (-) | 612 | WP_150051375.1 | dephospho-CoA kinase | - |
| F1E05_RS19280 | pilD | 4345872..4346738 (-) | 867 | WP_150051377.1 | A24 family peptidase | Machinery gene |
| F1E05_RS19285 | pilC | 4346811..4348031 (-) | 1221 | WP_150051379.1 | type II secretion system F family protein | Machinery gene |
| F1E05_RS19290 | pilB | 4348035..4349747 (-) | 1713 | WP_150051381.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| F1E05_RS19295 | - | 4349846..4350640 (-) | 795 | WP_150051383.1 | response regulator | - |
| F1E05_RS19300 | - | 4350647..4352089 (-) | 1443 | WP_150051385.1 | HDOD domain-containing protein | - |
Sequence
Protein
Download Length: 570 a.a. Molecular weight: 62725.32 Da Isoelectric Point: 5.8902
>NTDB_id=386603 F1E05_RS19290 WP_150051381.1 4348035..4349747(-) (pilB) [Methylomonas rhizoryzae strain GJ1]
MVTAPPNIHFSGLAKCLVQQGLLTEDAAAVAAQEAQKQKQPLVTYLVANKQVDSRTIAKLASSEFGVPLLDLDAVDLTSI
PVKLVSEKLIRQHHALPLFKRGNRLFIATADPTNFQALDEIKFHTRLNTENILVEEDKLVRCIDAALEAVDTTMGNLLDE
DLDNIDISGGDEKPAEDVSSSDIDEAPIVRFVNKILLDSIKKGVSDIHLEPFEKRFRIRFRADGILAEIASPPIGIANRI
ISRIKVMSKMDIAERRVPQDGRIKMQLSKTRAIDFRVNTCPTLFGEKVVLRILDPTSAQIGIEKLGFEPAQQKYFLDAIH
KPYGMVLVTGPTGSGKTVSLYTGLNLLNSVERNISTAEDPVEITVEGINQVNVNPKAGLTFAEALKAFLRQDPDVIMVGE
IRDIETASIAVKAAQTGHLVLSTLHTNDAPQTINRLVQMGIEPFNIVSAVNLIMAQRLARRLCEHCKKEADFPANVWLAA
GFNEEEIGTFKLYEPVGCEHCNNGYKGRVGIYQVLPISEKMRALILRGGNSMEMAELAKSEGINDLRASGLLKVRQGITS
LEEVDRVTKD
MVTAPPNIHFSGLAKCLVQQGLLTEDAAAVAAQEAQKQKQPLVTYLVANKQVDSRTIAKLASSEFGVPLLDLDAVDLTSI
PVKLVSEKLIRQHHALPLFKRGNRLFIATADPTNFQALDEIKFHTRLNTENILVEEDKLVRCIDAALEAVDTTMGNLLDE
DLDNIDISGGDEKPAEDVSSSDIDEAPIVRFVNKILLDSIKKGVSDIHLEPFEKRFRIRFRADGILAEIASPPIGIANRI
ISRIKVMSKMDIAERRVPQDGRIKMQLSKTRAIDFRVNTCPTLFGEKVVLRILDPTSAQIGIEKLGFEPAQQKYFLDAIH
KPYGMVLVTGPTGSGKTVSLYTGLNLLNSVERNISTAEDPVEITVEGINQVNVNPKAGLTFAEALKAFLRQDPDVIMVGE
IRDIETASIAVKAAQTGHLVLSTLHTNDAPQTINRLVQMGIEPFNIVSAVNLIMAQRLARRLCEHCKKEADFPANVWLAA
GFNEEEIGTFKLYEPVGCEHCNNGYKGRVGIYQVLPISEKMRALILRGGNSMEMAELAKSEGINDLRASGLLKVRQGITS
LEEVDRVTKD
Nucleotide
Download Length: 1713 bp
>NTDB_id=386603 F1E05_RS19290 WP_150051381.1 4348035..4349747(-) (pilB) [Methylomonas rhizoryzae strain GJ1]
ATGGTGACGGCTCCTCCTAACATCCATTTTAGTGGCTTAGCAAAATGTTTAGTCCAACAAGGCTTGCTAACCGAAGACGC
TGCAGCTGTAGCCGCACAAGAGGCCCAAAAACAAAAACAACCACTGGTAACCTATCTGGTTGCCAACAAGCAAGTCGATA
GTCGAACTATCGCCAAATTAGCGTCTAGCGAATTTGGGGTGCCACTGCTGGATCTGGACGCAGTTGACCTCACGTCGATT
CCGGTCAAATTAGTCAGCGAAAAACTAATTCGTCAACATCATGCGTTACCTCTATTCAAACGCGGTAACCGTTTGTTTAT
TGCAACTGCAGATCCTACAAATTTCCAGGCTCTGGATGAAATCAAGTTTCATACGCGGTTAAATACCGAAAATATTCTCG
TCGAAGAAGATAAGTTAGTCCGTTGTATCGATGCTGCTTTGGAAGCGGTTGATACGACAATGGGGAATTTACTTGACGAA
GATTTAGATAATATCGATATTTCCGGCGGCGATGAAAAGCCGGCGGAAGACGTATCGTCTTCCGACATCGACGAGGCGCC
GATCGTTCGTTTCGTCAATAAAATTCTATTGGATTCGATAAAAAAAGGGGTTTCCGACATCCACTTAGAGCCGTTCGAAA
AGCGATTCAGGATCCGATTTCGCGCGGACGGTATCCTTGCTGAAATCGCAAGCCCACCAATCGGGATCGCTAACCGAATT
ATTTCCCGCATCAAAGTCATGTCGAAAATGGATATTGCAGAACGCCGTGTGCCGCAGGACGGGCGGATCAAAATGCAATT
ATCGAAGACGCGAGCCATTGATTTTCGGGTAAATACCTGTCCGACTTTGTTTGGCGAAAAGGTTGTATTGAGGATCCTCG
ATCCTACCAGTGCGCAAATCGGGATAGAAAAATTGGGCTTTGAACCCGCGCAACAAAAATATTTTTTAGACGCCATACAT
AAGCCATATGGAATGGTTTTGGTTACAGGGCCCACCGGTAGTGGTAAGACGGTTTCCTTGTATACGGGGCTAAACTTGCT
GAATAGCGTCGAACGAAATATTTCCACTGCAGAAGATCCGGTCGAAATTACAGTGGAGGGTATTAATCAGGTAAACGTCA
ATCCCAAGGCAGGACTAACTTTTGCCGAAGCGCTAAAAGCATTTTTACGTCAAGACCCGGACGTTATAATGGTGGGCGAA
ATTAGGGATATAGAGACTGCAAGTATTGCGGTAAAAGCCGCGCAAACGGGACACTTAGTGTTGTCCACTCTGCACACCAA
CGATGCTCCGCAGACAATCAACCGCTTGGTGCAAATGGGCATAGAGCCGTTCAATATCGTATCCGCCGTCAATTTAATTA
TGGCACAACGTTTAGCGAGAAGGTTGTGCGAACATTGCAAAAAGGAAGCCGATTTTCCTGCAAATGTTTGGTTAGCGGCT
GGTTTTAACGAGGAGGAGATCGGTACATTCAAATTATACGAGCCGGTCGGTTGCGAACATTGTAACAACGGGTATAAAGG
TAGGGTGGGGATTTACCAAGTGTTGCCCATCAGTGAAAAAATGCGGGCGTTAATTCTTCGCGGCGGAAATTCGATGGAGA
TGGCTGAATTGGCAAAATCCGAAGGTATCAACGATTTACGGGCTTCCGGTTTGTTGAAAGTGCGGCAAGGTATTACCTCG
CTGGAAGAAGTCGACCGCGTAACCAAGGACTAA
ATGGTGACGGCTCCTCCTAACATCCATTTTAGTGGCTTAGCAAAATGTTTAGTCCAACAAGGCTTGCTAACCGAAGACGC
TGCAGCTGTAGCCGCACAAGAGGCCCAAAAACAAAAACAACCACTGGTAACCTATCTGGTTGCCAACAAGCAAGTCGATA
GTCGAACTATCGCCAAATTAGCGTCTAGCGAATTTGGGGTGCCACTGCTGGATCTGGACGCAGTTGACCTCACGTCGATT
CCGGTCAAATTAGTCAGCGAAAAACTAATTCGTCAACATCATGCGTTACCTCTATTCAAACGCGGTAACCGTTTGTTTAT
TGCAACTGCAGATCCTACAAATTTCCAGGCTCTGGATGAAATCAAGTTTCATACGCGGTTAAATACCGAAAATATTCTCG
TCGAAGAAGATAAGTTAGTCCGTTGTATCGATGCTGCTTTGGAAGCGGTTGATACGACAATGGGGAATTTACTTGACGAA
GATTTAGATAATATCGATATTTCCGGCGGCGATGAAAAGCCGGCGGAAGACGTATCGTCTTCCGACATCGACGAGGCGCC
GATCGTTCGTTTCGTCAATAAAATTCTATTGGATTCGATAAAAAAAGGGGTTTCCGACATCCACTTAGAGCCGTTCGAAA
AGCGATTCAGGATCCGATTTCGCGCGGACGGTATCCTTGCTGAAATCGCAAGCCCACCAATCGGGATCGCTAACCGAATT
ATTTCCCGCATCAAAGTCATGTCGAAAATGGATATTGCAGAACGCCGTGTGCCGCAGGACGGGCGGATCAAAATGCAATT
ATCGAAGACGCGAGCCATTGATTTTCGGGTAAATACCTGTCCGACTTTGTTTGGCGAAAAGGTTGTATTGAGGATCCTCG
ATCCTACCAGTGCGCAAATCGGGATAGAAAAATTGGGCTTTGAACCCGCGCAACAAAAATATTTTTTAGACGCCATACAT
AAGCCATATGGAATGGTTTTGGTTACAGGGCCCACCGGTAGTGGTAAGACGGTTTCCTTGTATACGGGGCTAAACTTGCT
GAATAGCGTCGAACGAAATATTTCCACTGCAGAAGATCCGGTCGAAATTACAGTGGAGGGTATTAATCAGGTAAACGTCA
ATCCCAAGGCAGGACTAACTTTTGCCGAAGCGCTAAAAGCATTTTTACGTCAAGACCCGGACGTTATAATGGTGGGCGAA
ATTAGGGATATAGAGACTGCAAGTATTGCGGTAAAAGCCGCGCAAACGGGACACTTAGTGTTGTCCACTCTGCACACCAA
CGATGCTCCGCAGACAATCAACCGCTTGGTGCAAATGGGCATAGAGCCGTTCAATATCGTATCCGCCGTCAATTTAATTA
TGGCACAACGTTTAGCGAGAAGGTTGTGCGAACATTGCAAAAAGGAAGCCGATTTTCCTGCAAATGTTTGGTTAGCGGCT
GGTTTTAACGAGGAGGAGATCGGTACATTCAAATTATACGAGCCGGTCGGTTGCGAACATTGTAACAACGGGTATAAAGG
TAGGGTGGGGATTTACCAAGTGTTGCCCATCAGTGAAAAAATGCGGGCGTTAATTCTTCGCGGCGGAAATTCGATGGAGA
TGGCTGAATTGGCAAAATCCGAAGGTATCAACGATTTACGGGCTTCCGGTTTGTTGAAAGTGCGGCAAGGTATTACCTCG
CTGGAAGAAGTCGACCGCGTAACCAAGGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Legionella pneumophila strain ERS1305867 |
55.575 |
100 |
0.56 |
| pilB | Acinetobacter baylyi ADP1 |
53.415 |
100 |
0.535 |
| pilB | Acinetobacter baumannii D1279779 |
52.66 |
98.947 |
0.521 |
| pilF | Neisseria gonorrhoeae MS11 |
47.695 |
98.947 |
0.472 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
47.153 |
98.596 |
0.465 |
| pilB | Vibrio campbellii strain DS40M4 |
46.359 |
98.772 |
0.458 |
| pilB | Vibrio cholerae strain A1552 |
50.196 |
89.474 |
0.449 |
| pilF | Thermus thermophilus HB27 |
39.892 |
97.193 |
0.388 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
40.927 |
90.877 |
0.372 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
37.993 |
97.895 |
0.372 |