Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   F2A31_RS01330 Genome accession   NZ_CP043909
Coordinates   279382..281514 (+) Length   710 a.a.
NCBI ID   WP_171490615.1    Uniprot ID   -
Organism   Acinetobacter suaedae strain C16S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274382..286514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS01310 (F2A31_01310) comM 276384..277442 (+) 1059 WP_150024850.1 pilus assembly protein PilM Machinery gene
  F2A31_RS01315 (F2A31_01315) pilN 277442..278086 (+) 645 WP_150024851.1 PilN domain-containing protein Machinery gene
  F2A31_RS01320 (F2A31_01320) pilO 278083..278793 (+) 711 WP_150024852.1 type 4a pilus biogenesis protein PilO Machinery gene
  F2A31_RS01325 (F2A31_01325) pilP 278793..279320 (+) 528 WP_150024853.1 pilus assembly protein PilP Machinery gene
  F2A31_RS01330 (F2A31_01330) pilQ 279382..281514 (+) 2133 WP_171490615.1 type IV pilus secretin PilQ family protein Machinery gene
  F2A31_RS01335 (F2A31_01335) aroK 281553..282095 (+) 543 WP_150024855.1 shikimate kinase AroK -
  F2A31_RS01340 (F2A31_01340) aroB 282116..283201 (+) 1086 WP_150024856.1 3-dehydroquinate synthase -
  F2A31_RS01345 (F2A31_01345) - 283217..284086 (+) 870 WP_150024857.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77286.08 Da        Isoelectric Point: 7.2171

>NTDB_id=386460 F2A31_RS01330 WP_171490615.1 279382..281514(+) (pilQ) [Acinetobacter suaedae strain C16S1]
MNRAFRQFSMGAVAIAVMQVASAQVNMTNIVPMGLADQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAKQTLKQTSI
PVATNEASSVEVAADDQRSRVIVNLKDAGAFTTRVEGNTFILKINSARPAIVSPVSTTARQVQQGVSNIGFQRGNQGEGL
VVIDLLGSNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEEKSPLKAKSQTYTGNKISLDFQDIEVRRVLQLLADFTNINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPIQSEYIKLSYAKAADILKLIEDSRDGKAGASNRTANSDSLALE
SLLSPRGSAVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGITRNNDLLV
GGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGATTAGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVM
TADKQPAKIESGTKIPYSSSTGAGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDAPSNPTPTGQLTISKNSID
TNVLVDNGETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=386460 F2A31_RS01330 WP_171490615.1 279382..281514(+) (pilQ) [Acinetobacter suaedae strain C16S1]
ATGAATCGTGCATTCCGTCAATTTTCTATGGGTGCTGTTGCTATAGCAGTAATGCAAGTAGCTTCAGCACAAGTAAACAT
GACTAATATTGTGCCTATGGGTTTGGCGGATCAGGGGACTGAGATTCGTGTCATGTTTAATGGTCTGCCACCACAGCCAC
AAGCATATCAACTTGAACAGCCTTCTCGTTTGATTTTGGATTTTGATAAAGCTAAACAAACGTTAAAACAAACGTCTATC
CCTGTTGCAACCAATGAGGCTAGTTCGGTTGAAGTTGCTGCTGATGATCAGCGCTCACGAGTGATTGTGAATCTAAAAGA
TGCTGGCGCTTTTACTACACGTGTTGAAGGCAATACCTTTATTCTAAAAATTAATTCAGCTCGTCCTGCTATTGTGAGTC
CTGTATCGACCACTGCACGTCAAGTACAACAAGGGGTTTCTAATATTGGTTTCCAGCGCGGTAATCAAGGTGAAGGCCTC
GTTGTGATTGATTTATTGGGCAGTAATACCCCTGTGGATGTACAGCAACAAGGTAGTAAAATTGTTGTGCGTACGATGGG
GAATAAAATTCCTACCCATTTAGCACGTCGTTTAAACACCAATGACTTCGCTACTCCTGTGGCAAGTATTGATGCCTACA
ATGACAAAGGGAATGGTGTGATTACCATTCAGTCTGCAGGTAGTTATGAATATATGGCTTATCAAGCCGAAAATAAACTT
ACAATTAGCCTCAAACGACCTGAAGAAAAATCACCATTAAAAGCAAAATCTCAGACTTATACAGGCAATAAAATTTCCTT
AGACTTCCAAGATATTGAAGTGCGACGCGTATTACAGTTACTCGCAGATTTTACCAATATCAACATGGTGGCTGCGGATA
CTGTACAAGGTAATATCACTTTACGTTTAAAGGATGTTCCTTGGGATCAGGCCTTGGATATCGTGCTGAAAACTAAAAAC
TTGGATAAGCGTCGTAATGGTAATGTGATTTGGATTGCACCAGTGGCAGAACTGATCAAGGCTGAGGAAGAAGAGGCAAA
AGCCATCGCTCAGAGTGTGAAGCTCGCGCCGATCCAATCAGAGTATATCAAGCTGAGTTATGCCAAAGCGGCGGATATCT
TAAAGCTGATTGAAGATTCTCGTGACGGTAAGGCTGGGGCATCAAATCGTACTGCGAATTCAGATTCACTCGCACTGGAA
AGTTTGTTAAGTCCACGTGGTAGTGCAGTGGCTGATGTACGAACCAATACTTTAATTGTAAATGATACTGCTCAAAATAT
TGACAAGATCCGTAAGATGGTTGATTTGCTGGATGTCTCTGTTAAGCAAGTTATGATCGAAGCCCGCATTGTTCGAGCAA
GCACTGACTTTACGAAGGAAATGGGGGTGAAGTGGGGAATCTTGTCTCAAGGTATCACTCGAAATAATGATTTGCTGGTT
GGTGGTAGTGATACTACGTTGTGGAATCTAAGAGAGCCTAAGAAAGACAGTGAGACTGGTGGGTGGAAGTATGAAATCGA
ACGTCCTGATAATTTAAATGTGGATTTGGGGGCGACGACTGCAGGCGCAAGCCGTATTGCTTTTGGCTTAATTAGTCTCT
CTGATTTTATGTTGGATTTAGAACTGTCGGCAGTGCAAGCAGATGGTTATGGTGAAGTCATTTCAACACCAAAAGTAATG
ACTGCAGATAAACAACCTGCAAAAATTGAATCAGGAACAAAGATTCCATATTCCTCTTCAACTGGTGCAGGCGCAAATGC
GGTACCTAAGACGGAGTTTATTGATGCAACATTGAGTTTGGATGTGACACCAAGCATCACGCCAGATGGAAAAGTCATGA
TGAAACTCAATATTACCAAGGATGCGCCAAGTAACCCGACACCAACAGGTCAGCTAACAATTAGCAAGAACTCAATTGAT
ACTAACGTGTTGGTTGATAATGGTGAAACTGTGGTGCTTGGAGGGATTTTTGAGCAAGAAAATATCAGCTCGCAAATCAA
AGTTCCATTTTTGGGGGATCTTCCTTATGTCGGAAGGCTTTTCCGTCGAGATCTGAAAACAGACAATAAACGTGAACTGC
TTATTTTTGTGACACCGAGAATTGTTAATGACACTTTGACGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

AMIN domain (AMIN)

(37-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)

Bacterial type II and III secretion system protein (Secretin)

(544-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75

100

0.765
  pilQ Acinetobacter baumannii strain A118

74.862

100

0.763
  comQ Acinetobacter baylyi ADP1

70.99

100

0.717
  pilQ Pseudomonas aeruginosa PAK

39.538

100

0.41
  pilQ Legionella pneumophila strain Lp02

38.782

94.789

0.368
  pilQ Legionella pneumophila strain ERS1305867

38.782

94.789

0.368

Multiple sequence alignment