Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   F2A31_RS01320 Genome accession   NZ_CP043909
Coordinates   278083..278793 (+) Length   236 a.a.
NCBI ID   WP_150024852.1    Uniprot ID   -
Organism   Acinetobacter suaedae strain C16S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273083..283793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS01305 (F2A31_01305) ponA 273627..276221 (-) 2595 WP_150024849.1 penicillin-binding protein PBP1a -
  F2A31_RS01310 (F2A31_01310) comM 276384..277442 (+) 1059 WP_150024850.1 pilus assembly protein PilM Machinery gene
  F2A31_RS01315 (F2A31_01315) pilN 277442..278086 (+) 645 WP_150024851.1 PilN domain-containing protein Machinery gene
  F2A31_RS01320 (F2A31_01320) pilO 278083..278793 (+) 711 WP_150024852.1 type 4a pilus biogenesis protein PilO Machinery gene
  F2A31_RS01325 (F2A31_01325) pilP 278793..279320 (+) 528 WP_150024853.1 pilus assembly protein PilP Machinery gene
  F2A31_RS01330 (F2A31_01330) pilQ 279382..281514 (+) 2133 WP_171490615.1 type IV pilus secretin PilQ family protein Machinery gene
  F2A31_RS01335 (F2A31_01335) aroK 281553..282095 (+) 543 WP_150024855.1 shikimate kinase AroK -
  F2A31_RS01340 (F2A31_01340) aroB 282116..283201 (+) 1086 WP_150024856.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27047.62 Da        Isoelectric Point: 5.0040

>NTDB_id=386458 F2A31_RS01320 WP_150024852.1 278083..278793(+) (pilO) [Acinetobacter suaedae strain C16S1]
MSQDELNDLNQEGAAVKKKKMTVEQFFQQFNTLDMNNYGSWPWSVKVTCWIFILLAVAALGYFLVIQKQLQTIANAQARE
QSLLNEFREKESKLRNLQQYQTQLQEMEANFNQQLEQLPKETEIPSLVEDMNLTGVNSGLKFKNIRLEKEIRQEFFIEQP
ISLEATGDYHAFGAFATGIASLPRIVTLHDFTVEAKEDTQKKSDIPVVHYTVKAKTYRYVGADDQAESTPVQGGQR

Nucleotide


Download         Length: 711 bp        

>NTDB_id=386458 F2A31_RS01320 WP_150024852.1 278083..278793(+) (pilO) [Acinetobacter suaedae strain C16S1]
ATGAGCCAAGATGAATTGAATGATCTTAATCAAGAAGGTGCAGCTGTTAAGAAAAAGAAGATGACAGTTGAGCAGTTTTT
CCAGCAGTTTAATACCTTGGACATGAATAACTATGGCAGTTGGCCATGGTCGGTGAAAGTGACGTGTTGGATTTTTATTT
TGTTGGCTGTCGCTGCATTGGGGTATTTTTTAGTCATCCAAAAACAGTTACAAACTATTGCGAATGCTCAAGCACGTGAA
CAAAGTCTGTTAAATGAATTTAGAGAAAAGGAATCTAAATTACGTAATTTGCAGCAATATCAAACTCAGTTGCAAGAAAT
GGAAGCGAATTTCAATCAGCAACTTGAACAATTACCAAAAGAGACGGAAATTCCAAGCTTGGTTGAGGATATGAACTTAA
CGGGAGTAAATTCTGGTCTGAAATTTAAAAACATTCGTTTAGAAAAAGAAATTAGACAAGAGTTCTTTATTGAACAGCCA
ATTAGCTTAGAAGCGACAGGTGATTATCACGCTTTTGGTGCTTTTGCGACAGGGATTGCCTCATTACCTCGAATTGTGAC
TTTACATGATTTCACGGTTGAAGCGAAAGAAGATACGCAGAAAAAATCAGATATTCCTGTTGTTCATTATACAGTTAAAG
CAAAAACCTATCGTTATGTTGGTGCAGATGATCAGGCTGAAAGCACACCTGTTCAAGGGGGACAACGTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

74.672

97.034

0.725
  comO Acinetobacter baylyi ADP1

68.033

100

0.703

Multiple sequence alignment