Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HHJ60_RS00290 Genome accession   NZ_CP051638
Coordinates   64402..64992 (+) Length   196 a.a.
NCBI ID   WP_017806897.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP15     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 59402..69992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ60_RS00270 (HHJ60_00270) - 61107..61409 (+) 303 WP_302476575.1 DUF305 domain-containing protein -
  HHJ60_RS00275 (HHJ60_00275) - 61569..61937 (+) 369 Protein_55 DNA-processing protein DprA -
  HHJ60_RS00280 (HHJ60_00280) - 61935..62480 (-) 546 Protein_56 BCCT family transporter -
  HHJ60_RS00285 (HHJ60_00285) tig 62986..64284 (+) 1299 WP_035685589.1 trigger factor -
  HHJ60_RS00290 (HHJ60_00290) clpP 64402..64992 (+) 591 WP_017806897.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  HHJ60_RS00295 (HHJ60_00295) clpX 64996..66246 (+) 1251 WP_035685587.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  HHJ60_RS00300 (HHJ60_00300) aspA 66469..67896 (+) 1428 WP_035685584.1 aspartate ammonia-lyase -
  HHJ60_RS00305 (HHJ60_00305) - 67987..69783 (-) 1797 WP_035685582.1 long-chain fatty acid--CoA ligase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21613.88 Da        Isoelectric Point: 5.0640

>NTDB_id=386083 HHJ60_RS00290 WP_017806897.1 64402..64992(+) (clpP) [Avibacterium paragallinarum strain ADL-AP15]
MALIPMVVEQTARGERSYDIYSRLLKERVIFLSGQVEDNMANLIVAQLLFLESENPDKDISIYINSPGGSVTAGMAIYDT
MQFIKPDVRTLCIGQACSMGAFLLAGGTPGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKIKQTLNEKLAFHTGQ
PLAKIENDTDRDNFMSAEEAKAYGLIDEVLIKRETE

Nucleotide


Download         Length: 591 bp        

>NTDB_id=386083 HHJ60_RS00290 WP_017806897.1 64402..64992(+) (clpP) [Avibacterium paragallinarum strain ADL-AP15]
ATGGCTTTAATCCCTATGGTCGTTGAACAGACCGCAAGAGGCGAGCGTTCATATGACATTTATTCACGTTTATTAAAAGA
GCGTGTGATTTTTTTAAGTGGGCAAGTTGAAGACAATATGGCGAATTTGATCGTCGCACAACTGCTTTTTTTAGAATCGG
AAAATCCAGACAAAGATATTAGTATTTACATTAACTCTCCGGGCGGCTCGGTAACCGCGGGAATGGCGATTTATGACACA
ATGCAATTCATTAAGCCTGATGTGAGAACCCTTTGTATTGGACAGGCTTGTTCAATGGGAGCATTTTTACTCGCGGGTGG
CACACCGGGCAAACGTGCGGCATTACCAAATGCACGGGTGATGATTCACCAACCACTAGGGGGATTCCGTGGGCAGGCTT
CCGATATTCAAATTCACGCCCAAGAAATCTTAAAAATTAAGCAGACATTGAATGAAAAATTGGCATTCCACACAGGGCAG
CCTTTAGCAAAAATTGAAAACGATACTGATCGCGACAATTTTATGTCTGCCGAAGAAGCCAAAGCTTACGGCTTAATTGA
CGAAGTCCTAATTAAAAGAGAAACGGAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.041

98.98

0.673
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.368

96.939

0.653
  clpP Streptococcus thermophilus LMD-9

54.639

98.98

0.541
  clpP Streptococcus pyogenes JRS4

54.639

98.98

0.541
  clpP Streptococcus pyogenes MGAS315

54.639

98.98

0.541
  clpP Streptococcus thermophilus LMG 18311

54.639

98.98

0.541
  clpP Streptococcus pneumoniae R6

55.263

96.939

0.536
  clpP Streptococcus pneumoniae Rx1

55.263

96.939

0.536
  clpP Streptococcus pneumoniae D39

55.263

96.939

0.536
  clpP Streptococcus pneumoniae TIGR4

55.263

96.939

0.536
  clpP Streptococcus mutans UA159

53.333

99.49

0.531
  clpP Lactococcus lactis subsp. cremoris KW2

53.158

96.939

0.515
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.105

96.939

0.505

Multiple sequence alignment