Detailed information NTG0386084

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: HHJ60_RS00295
• Genome accession: NZ_CP051638
• Coordinates: 64996..66246 (+)
• Length: 416 a.a.
• NCBI ID: WP_035685587.1
• Uniprot ID: -
• Organism: Avibacterium paragallinarum strain ADL-AP15
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 59996..71246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ60_RS00270 (HHJ60_00270)	-	61107..61409 (+)	303	WP_302476575.1	DUF305 domain-containing protein	-
HHJ60_RS00275 (HHJ60_00275)	-	61569..61937 (+)	369	Protein_55	DNA-processing protein DprA	-
HHJ60_RS00280 (HHJ60_00280)	-	61935..62480 (-)	546	Protein_56	BCCT family transporter	-
HHJ60_RS00285 (HHJ60_00285)	tig	62986..64284 (+)	1299	WP_035685589.1	trigger factor	-
HHJ60_RS00290 (HHJ60_00290)	clpP	64402..64992 (+)	591	WP_017806897.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
HHJ60_RS00295 (HHJ60_00295)	clpX	64996..66246 (+)	1251	WP_035685587.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
HHJ60_RS00300 (HHJ60_00300)	aspA	66469..67896 (+)	1428	WP_035685584.1	aspartate ammonia-lyase	-
HHJ60_RS00305 (HHJ60_00305)	-	67987..69783 (-)	1797	WP_035685582.1	long-chain fatty acid--CoA ligase	-
HHJ60_RS00310 (HHJ60_00310)	rimI	69944..70387 (-)	444	WP_017805347.1	ribosomal protein S18-alanine N-acetyltransferase	-
HHJ60_RS00315 (HHJ60_00315)	-	70389..70799 (-)	411	WP_026138449.1	DNA polymerase III subunit psi	-

Sequence

Protein

• Length: 416 a.a.
• Molecular weight: 45789.51 Da
• Isoelectric Point: 4.8097

>NTDB_id=386084 HHJ60_RS00295 WP_035685587.1 64996..66246(+) (clpX) [Avibacterium paragallinarum strain ADL-AP15]
MTTEQQLHCSICGKERSEVKKLIAGEDGAICNECIELCHNLLVEAEQQANENPQENASQPEKAELPTPHQIRAHLDDYVI
GQDYAKKVLAVAVYNHYKRQQAGYKADDVELGKSNILLIGPTGSGKTLLAETLARMLNVPFAMADATTLTEAGYVGEDVE
NVLQKLLQNCDYDVEKAEKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTIASIPPQGGRKHPQQEMLRLD
TSKILFICGGAFAGLDKIIEKRVHVGSGIGFGAEVKGESDKATLTELFAQVEPDDLMKFGLIPEFIGRLPVIAPLAELDE
EALIQILTEPKNALTKQYQVLFNLENVKLEFTHDALVAMAKQALERKTGARGLRSIVEGLLLDTMYDLPSLKNVEKVIIE
ESTVTKKQAPQIIYKS

Nucleotide

• Length: 1251 bp

>NTDB_id=386084 HHJ60_RS00295 WP_035685587.1 64996..66246(+) (clpX) [Avibacterium paragallinarum strain ADL-AP15]
ATGACAACAGAACAACAACTCCATTGTTCCATCTGCGGCAAAGAACGCAGCGAAGTCAAAAAATTGATCGCGGGTGAAGA
TGGGGCGATTTGTAATGAATGTATCGAACTTTGCCACAATTTATTGGTTGAGGCAGAGCAACAAGCAAACGAAAACCCGC
AAGAAAACGCCTCACAACCTGAAAAGGCAGAATTACCTACACCTCATCAAATTCGTGCGCATTTAGATGATTATGTTATT
GGGCAAGACTACGCTAAAAAAGTGCTTGCCGTTGCGGTGTATAATCATTACAAACGCCAACAGGCGGGCTATAAGGCTGA
CGATGTGGAACTAGGTAAAAGTAATATTTTGCTTATTGGTCCAACGGGAAGCGGAAAAACCCTATTGGCAGAAACCCTAG
CTAGAATGCTAAATGTGCCTTTTGCAATGGCTGATGCAACCACACTCACCGAAGCGGGTTATGTTGGTGAAGATGTAGAA
AATGTGCTACAAAAACTTTTGCAAAATTGCGATTATGACGTGGAAAAAGCAGAAAAAGGCATTATTTACATTGATGAAAT
TGACAAAATTACGCGGAAATCAGAGAACCCATCTATTACTCGCGATGTATCAGGCGAGGGCGTTCAGCAAGCCTTACTTA
AATTAGTAGAGGGAACGATTGCGTCAATCCCACCACAAGGTGGACGCAAACACCCACAACAAGAGATGTTACGCCTTGAT
ACATCAAAAATTCTCTTTATCTGCGGCGGGGCTTTCGCGGGGTTAGATAAAATCATTGAAAAACGCGTACATGTAGGTAG
TGGTATCGGCTTTGGAGCAGAAGTGAAAGGAGAATCAGATAAAGCTACCTTGACGGAACTATTTGCCCAAGTTGAACCTG
ATGATTTAATGAAATTTGGTTTAATCCCTGAATTTATCGGGCGTTTACCCGTGATAGCACCATTAGCCGAGCTTGATGAA
GAAGCCTTAATCCAAATTCTGACCGAACCGAAAAATGCACTTACTAAGCAATATCAAGTGCTATTCAACCTTGAAAATGT
GAAGTTAGAATTTACCCACGATGCCCTCGTGGCAATGGCAAAACAGGCGTTGGAAAGAAAAACAGGGGCGAGGGGATTGC
GTTCTATCGTAGAGGGATTGTTGCTTGATACGATGTACGATCTTCCTTCATTGAAAAATGTCGAGAAGGTAATCATTGAA
GAGAGTACGGTAACAAAAAAACAAGCTCCACAGATAATATATAAATCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (113-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (7-43)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	57.664	98.798	0.57
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.122	98.558	0.543