Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EVS87_RS08495 Genome accession   NZ_CP043559
Coordinates   1655531..1656781 (+) Length   416 a.a.
NCBI ID   WP_039166613.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CHB19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1650531..1661781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS08470 (EVS87_008470) ymfI 1651941..1652669 (+) 729 WP_135008876.1 elongation factor P 5-aminopentanone reductase -
  EVS87_RS08475 (EVS87_008475) - 1652742..1652999 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  EVS87_RS08480 (EVS87_008480) - 1653131..1653922 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  EVS87_RS08485 (EVS87_008485) - 1653946..1654857 (+) 912 WP_039166616.1 helix-turn-helix domain-containing protein -
  EVS87_RS08490 (EVS87_008490) pgsA 1654933..1655514 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EVS87_RS08495 (EVS87_008495) cinA 1655531..1656781 (+) 1251 WP_039166613.1 competence/damage-inducible protein A Machinery gene
  EVS87_RS08500 (EVS87_008500) recA 1656959..1658002 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  EVS87_RS08505 (EVS87_008505) rny 1658303..1659865 (+) 1563 WP_003211958.1 ribonuclease Y -
  EVS87_RS08510 (EVS87_008510) - 1659955..1660749 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  EVS87_RS08515 (EVS87_008515) spoVS 1660952..1661212 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45614.73 Da        Isoelectric Point: 4.8624

>NTDB_id=385109 EVS87_RS08495 WP_039166613.1 1655531..1656781(+) (cinA) [Bacillus altitudinis strain CHB19]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKDS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=385109 EVS87_RS08495 WP_039166613.1 1655531..1656781(+) (cinA) [Bacillus altitudinis strain CHB19]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTTTACGGATATGGTGATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCATTAGAGCTCGCCGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGACCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGATAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.879

99.519

0.745
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment