Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | F0316_RS02185 | Genome accession | NZ_CP043554 |
| Coordinates | 438610..439032 (-) | Length | 140 a.a. |
| NCBI ID | WP_000649339.1 | Uniprot ID | A0A655ZJH5 |
| Organism | Vibrio cholerae strain RFB16 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 433610..444032
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0316_RS02165 (F0316_02165) | coaE | 434108..434716 (-) | 609 | WP_000011557.1 | dephospho-CoA kinase | - |
| F0316_RS02170 (F0316_02170) | pilD | 434713..435588 (-) | 876 | WP_000418747.1 | A24 family peptidase | Machinery gene |
| F0316_RS02175 (F0316_02175) | pilC | 435646..436872 (-) | 1227 | WP_119779472.1 | type II secretion system F family protein | Machinery gene |
| F0316_RS02180 (F0316_02180) | pilB | 436915..438603 (-) | 1689 | WP_149560167.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| F0316_RS02185 (F0316_02185) | pilA | 438610..439032 (-) | 423 | WP_000649339.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| F0316_RS02190 (F0316_02190) | nadC | 439277..440167 (-) | 891 | WP_000665267.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| F0316_RS02195 (F0316_02195) | ampD | 440465..441010 (+) | 546 | WP_000567318.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| F0316_RS02200 (F0316_02200) | fldB | 441305..441823 (-) | 519 | WP_000690112.1 | flavodoxin FldB | - |
| F0316_RS02205 (F0316_02205) | xerD | 441961..442869 (+) | 909 | WP_001287472.1 | site-specific tyrosine recombinase XerD | - |
| F0316_RS02210 (F0316_02210) | dsbC | 442886..443638 (+) | 753 | WP_000115049.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 14869.11 Da Isoelectric Point: 7.7772
>NTDB_id=385047 F0316_RS02185 WP_000649339.1 438610..439032(-) (pilA) [Vibrio cholerae strain RFB16]
MKAYKNKQQQGFTLIELMIVVAIIGVLAAVAIPAYKDYVKKSEAASALATLRALITPAELFYQEKGITAAANLSTDLGSL
SGANNLGIITSELVSSKPTLKFEFGANSSMTSNDTLTFTREDTGWKCAKTTNVPAIDGCQ
MKAYKNKQQQGFTLIELMIVVAIIGVLAAVAIPAYKDYVKKSEAASALATLRALITPAELFYQEKGITAAANLSTDLGSL
SGANNLGIITSELVSSKPTLKFEFGANSSMTSNDTLTFTREDTGWKCAKTTNVPAIDGCQ
Nucleotide
Download Length: 423 bp
>NTDB_id=385047 F0316_RS02185 WP_000649339.1 438610..439032(-) (pilA) [Vibrio cholerae strain RFB16]
ATGAAAGCGTATAAAAACAAACAACAGCAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCGATTATTGGTGTGTT
GGCTGCTGTCGCAATTCCGGCTTATAAAGATTATGTAAAAAAATCGGAGGCTGCTTCTGCTTTAGCAACATTAAGAGCAT
TGATCACCCCAGCTGAACTTTTCTATCAAGAAAAAGGAATAACGGCCGCAGCTAATCTTTCAACAGATTTAGGATCATTA
AGTGGTGCAAATAACCTCGGCATTATCACATCTGAGCTCGTAAGTTCCAAGCCAACACTTAAGTTTGAATTTGGTGCTAA
TAGCTCTATGACAAGTAATGATACTTTGACTTTCACTAGAGAAGATACTGGATGGAAATGTGCGAAAACTACAAATGTTC
CGGCTATTGATGGTTGCCAATAA
ATGAAAGCGTATAAAAACAAACAACAGCAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCGATTATTGGTGTGTT
GGCTGCTGTCGCAATTCCGGCTTATAAAGATTATGTAAAAAAATCGGAGGCTGCTTCTGCTTTAGCAACATTAAGAGCAT
TGATCACCCCAGCTGAACTTTTCTATCAAGAAAAAGGAATAACGGCCGCAGCTAATCTTTCAACAGATTTAGGATCATTA
AGTGGTGCAAATAACCTCGGCATTATCACATCTGAGCTCGTAAGTTCCAAGCCAACACTTAAGTTTGAATTTGGTGCTAA
TAGCTCTATGACAAGTAATGATACTTTGACTTTCACTAGAGAAGATACTGGATGGAAATGTGCGAAAACTACAAATGTTC
CGGCTATTGATGGTTGCCAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
61.429 |
100 |
0.614 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.892 |
100 |
0.443 |
| pilA | Vibrio cholerae strain A1552 |
41.892 |
100 |
0.443 |
| pilA | Vibrio cholerae C6706 |
41.892 |
100 |
0.443 |
| pilA | Pseudomonas aeruginosa PAK |
41.606 |
97.857 |
0.407 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40 |
96.429 |
0.386 |