Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FZ025_RS04635 Genome accession   NZ_CP043476
Coordinates   1007801..1009060 (+) Length   419 a.a.
NCBI ID   WP_046978036.1    Uniprot ID   A0A2S7F302
Organism   Xanthomonas hyacinthi strain CFBP 1156     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1002801..1014060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZ025_RS04605 (FZ025_04655) - 1002823..1003116 (+) 294 WP_046978041.1 addiction module antidote protein -
  FZ025_RS04610 (FZ025_04660) pilB 1003144..1004880 (-) 1737 WP_046978045.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FZ025_RS04615 (FZ025_04665) - 1005088..1005378 (+) 291 WP_046978040.1 nucleotidyltransferase family protein -
  FZ025_RS04620 (FZ025_04670) - 1005375..1005746 (+) 372 WP_046978039.1 DUF86 domain-containing protein -
  FZ025_RS04625 (FZ025_04675) - 1005882..1006577 (+) 696 WP_104557689.1 transposase -
  FZ025_RS04630 (FZ025_04680) - 1006977..1007414 (-) 438 WP_046978037.1 pilin -
  FZ025_RS04635 (FZ025_04685) pilC 1007801..1009060 (+) 1260 WP_046978036.1 type II secretion system F family protein Machinery gene
  FZ025_RS04640 (FZ025_04690) - 1009067..1009930 (+) 864 WP_046978035.1 A24 family peptidase -
  FZ025_RS04645 (FZ025_04695) coaE 1009944..1010564 (+) 621 WP_046978034.1 dephospho-CoA kinase -
  FZ025_RS04650 (FZ025_04700) - 1010835..1012175 (-) 1341 WP_046978033.1 HAMP domain-containing sensor histidine kinase -
  FZ025_RS04655 (FZ025_04705) - 1012168..1012845 (-) 678 WP_046978044.1 response regulator transcription factor -
  FZ025_RS22220 - 1012860..1013309 (-) 450 WP_244292462.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45691.95 Da        Isoelectric Point: 10.1183

>NTDB_id=384416 FZ025_RS04635 WP_046978036.1 1007801..1009060(+) (pilC) [Xanthomonas hyacinthi strain CFBP 1156]
MSATRSAVPKEPVARNTSQQVPFVWEGTDKRGVKMKGEQAAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISTKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVANYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWI
LLILLIGTIGGFIFAYKRSPSMQHGMDRLVLKVPIIGQIMHNSAIARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNMAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=384416 FZ025_RS04635 WP_046978036.1 1007801..1009060(+) (pilC) [Xanthomonas hyacinthi strain CFBP 1156]
ATGTCCGCAACTCGTAGCGCAGTACCCAAAGAGCCCGTGGCGCGCAATACCAGCCAGCAGGTGCCGTTCGTCTGGGAGGG
GACGGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGGCCGCCAAGAACGCCAACCTGCTGCGTGCCGAGCTCCGCCGCC
AGGGCATCACACCGTCGGTGGTCAAACCCAAGCCCAAACCCCTGTTCGGCGCCGCCGGCAGCAAGATCAGCACCAAGGAC
ATCGCCTTTTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTTCCCATCGTGGGATCGCTGGAGATCATCGCCAG
CGGGCATAAGAACCCCCGCATGAAAAAGATGGTGGATCAGGTCCGTACCGACATTGAGGGCGGCTCGTCGCTTTATGAGG
CGATCAGCAAGCACCCGGTCCAGTTCGACGAGCTCTACCGCAATCTGGTCAAGGCCGGCGAAGGCGCCGGCGTGCTCGAA
ACCGTCCTGGAGACGGTAGCGAACTACAAGGAGAACATCGAAGCGCTAAAGGGCAAGATCAAGAAAGCCTTGTTCTACCC
GGCCATGGTCATGGCGGTCGCGTTGCTGGTCAGTTCGATCCTGCTGGTGTGGGTGGTGCCGCAATTCGAGGATGTATTCA
AAGGCTTTGGCGCCGAGTTGCCTGCGTTTACCCAGATGATCGTGGCCGCCTCGCGCTTCATGGTGTCTTATTGGTGGATC
CTGCTGATCCTGCTGATTGGCACGATTGGCGGCTTCATCTTCGCCTACAAGCGCTCGCCCTCGATGCAGCACGGCATGGA
CCGGTTGGTCCTGAAGGTACCGATCATCGGCCAGATCATGCACAACAGCGCCATTGCGCGCTTTTCGCGGACGCTGGGCG
TGACCTTCCGTGCGGGCGTCCCGTTGGTAGAGGCCCTGGACATCGTTGCCGGCGCCACCGGCAACAGTGTGTACGAAAAA
GCCGTGCTACGCATGCGCGATGACGTATCAGTGGGTTATCCGGTCAACATGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTGGATGCGTTGAGCAGCCTGCTCGAGCCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTACCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S7F302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.228

96.42

0.504
  pilC Acinetobacter baumannii D1279779

51.471

97.375

0.501
  pilC Acinetobacter baylyi ADP1

51.225

97.375

0.499
  pilC Pseudomonas stutzeri DSM 10701

51.768

94.511

0.489
  pilG Neisseria gonorrhoeae MS11

43.467

94.988

0.413
  pilG Neisseria meningitidis 44/76-A

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

41.728

96.659

0.403
  pilC Vibrio campbellii strain DS40M4

41.457

94.988

0.394

Multiple sequence alignment