Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HF085_RS10075 Genome accession   NZ_CP051479
Coordinates   2039096..2040208 (-) Length   370 a.a.
NCBI ID   WP_249739934.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2034096..2045208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF085_RS10065 (HF085_00030) gyrA 2034461..2037115 (-) 2655 WP_249739933.1 DNA gyrase subunit A -
  HF085_RS10070 (HF085_00025) gyrB 2037152..2039086 (-) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HF085_RS10075 (HF085_00020) recF 2039096..2040208 (-) 1113 WP_249739934.1 DNA replication/repair protein RecF Machinery gene
  HF085_RS10080 (HF085_00015) yaaA 2040205..2040450 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  HF085_RS10085 (HF085_00010) dnaN 2040831..2041964 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  HF085_RS10090 (HF085_00005) dnaA 2042242..2043603 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  HF085_RS10095 (HF085_13905) rpmH 2044334..2044471 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  HF085_RS10100 (HF085_13900) rnpA 2044592..2044945 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42415.43 Da        Isoelectric Point: 6.4362

>NTDB_id=384110 HF085_RS10075 WP_249739934.1 2039096..2040208(-) (recF) [Staphylococcus aureus strain NGA76]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLAQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPVLLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=384110 HF085_RS10075 WP_249739934.1 2039096..2040208(-) (recF) [Staphylococcus aureus strain NGA76]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTTAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGCCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCGTCTTATTATTAGATGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497

Multiple sequence alignment