Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FZF10_RS18025 Genome accession   NZ_CP043440
Coordinates   3461199..3462065 (-) Length   288 a.a.
NCBI ID   WP_149137367.1    Uniprot ID   -
Organism   Cupriavidus campinensis strain MJ1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3456199..3467065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZF10_RS18000 - 3456798..3457238 (+) 441 WP_149137364.1 NUDIX domain-containing protein -
  FZF10_RS18005 - 3457303..3459345 (+) 2043 WP_149137365.1 OPT family oligopeptide transporter -
  FZF10_RS18010 - 3459375..3459566 (-) 192 WP_144201279.1 DNA gyrase inhibitor YacG -
  FZF10_RS18015 zapD 3459577..3460335 (-) 759 WP_144201281.1 cell division protein ZapD -
  FZF10_RS18020 coaE 3460536..3461144 (-) 609 WP_149137366.1 dephospho-CoA kinase -
  FZF10_RS18025 pilD 3461199..3462065 (-) 867 WP_149137367.1 A24 family peptidase Machinery gene
  FZF10_RS18030 pilG 3462069..3463334 (-) 1266 WP_149137368.1 type II secretion system F family protein Machinery gene
  FZF10_RS18035 pilF 3463371..3465098 (-) 1728 WP_149137369.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FZF10_RS18045 ispB 3465495..3466424 (-) 930 WP_149137370.1 octaprenyl diphosphate synthase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31213.24 Da        Isoelectric Point: 7.0280

>NTDB_id=384108 FZF10_RS18025 WP_149137367.1 3461199..3462065(-) (pilD) [Cupriavidus campinensis strain MJ1]
MQAVSALEAVPPLLLVVAAGLLGLLVGSFLNVVIHRLPRMMEHDEANYLAELRDEPLPHPDRYNLMVPRSACPHCGHQIA
AWENVPVISYLFLRGKCSACKTPISIRYPLVELATAVLSALAMWHFGATVQALAAIVMVWSLVTLTMIDADTQLLPDQIT
LPLLWLGLLLNLNGAFAPLADAVIGAAAGYLLLWSIYWLFKLLRGKEGMGYGDFKLMGALGAWFGWQALPALVLLSSVVG
AMFGIVLLVVRRQGRETPFPFGPFIAGAGLIVLFFGADVLPLGLTFSR

Nucleotide


Download         Length: 867 bp        

>NTDB_id=384108 FZF10_RS18025 WP_149137367.1 3461199..3462065(-) (pilD) [Cupriavidus campinensis strain MJ1]
ATGCAGGCTGTATCCGCGCTTGAAGCCGTGCCGCCGCTGTTGCTTGTCGTGGCGGCCGGCCTGCTGGGCCTGCTGGTGGG
CAGTTTCCTCAACGTGGTGATCCATCGCCTGCCCCGGATGATGGAGCACGACGAGGCCAACTATCTGGCCGAACTCCGAG
ACGAACCGCTGCCCCACCCGGACCGCTACAACCTCATGGTGCCGCGCTCGGCCTGCCCGCACTGCGGACACCAGATCGCC
GCGTGGGAAAACGTGCCGGTGATCAGTTACCTGTTCCTGCGCGGGAAATGCTCGGCCTGCAAGACGCCGATCAGCATCCG
CTATCCGCTGGTGGAACTGGCCACGGCCGTGCTGAGCGCGCTGGCGATGTGGCATTTCGGCGCGACCGTGCAGGCGCTGG
CCGCCATCGTCATGGTCTGGAGCCTGGTCACGCTGACCATGATCGACGCCGACACCCAGCTGCTGCCGGACCAGATCACG
CTGCCCCTGCTCTGGCTGGGGCTGCTGCTGAACCTGAACGGCGCCTTCGCGCCACTGGCCGATGCCGTGATCGGCGCCGC
CGCCGGCTACCTGCTGCTGTGGAGCATTTACTGGCTGTTCAAGCTCCTGCGCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGCTGATGGGCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCGCTGCCGGCGCTGGTGCTGCTGTCGTCGGTGGTGGGC
GCGATGTTCGGCATCGTGCTGCTGGTCGTGCGGCGCCAGGGCCGCGAGACGCCGTTCCCGTTCGGGCCGTTCATCGCCGG
CGCAGGGCTGATCGTGCTGTTCTTCGGCGCCGACGTGCTGCCGCTTGGGCTAACCTTCAGCCGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(136-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.311

94.792

0.524
  pilD Vibrio campbellii strain DS40M4

54.044

94.444

0.51
  pilD Neisseria gonorrhoeae MS11

50.368

94.444

0.476
  pilD Acinetobacter baumannii D1279779

48.162

94.444

0.455
  pilD Acinetobacter nosocomialis M2

47.794

94.444

0.451

Multiple sequence alignment