Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XOCgx_RS05760 Genome accession   NZ_CP043403
Coordinates   1196225..1197484 (-) Length   419 a.a.
NCBI ID   WP_014504324.1    Uniprot ID   G7TE90
Organism   Xanthomonas oryzae pv. oryzicola strain GX01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1182077..1200628 1196225..1197484 within 0


Gene organization within MGE regions


Location: 1182077..1200628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XOCgx_RS05695 (XOCgx_1241) - 1182077..1182268 (-) 192 WP_149621391.1 hypothetical protein -
  XOCgx_RS23280 (XOCgx_1242) - 1182661..1183146 (-) 486 WP_154219727.1 DUF6714 family protein -
  XOCgx_RS05705 (XOCgx_1243) - 1183146..1183778 (-) 633 WP_224229828.1 hypothetical protein -
  XOCgx_RS05710 (XOCgx_1244) - 1183777..1184793 (+) 1017 WP_076342622.1 IS30 family transposase -
  XOCgx_RS24310 (XOCgx_1245) - 1184903..1185433 (-) 531 Protein_1027 transposase -
  XOCgx_RS05730 (XOCgx_1248) - 1186663..1187031 (-) 369 WP_011408064.1 DUF6869 domain-containing protein -
  XOCgx_RS05735 (XOCgx_1249) - 1187037..1188620 (-) 1584 WP_224229885.1 RHS repeat-associated core domain-containing protein -
  XOCgx_RS05740 (XOCgx_1251) - 1189025..1193524 (-) 4500 WP_224229830.1 RHS repeat-associated core domain-containing protein -
  XOCgx_RS05750 (XOCgx_1253) coaE 1194733..1195341 (-) 609 WP_014504326.1 dephospho-CoA kinase -
  XOCgx_RS05755 (XOCgx_1254) - 1195355..1196218 (-) 864 WP_047340103.1 A24 family peptidase -
  XOCgx_RS05760 (XOCgx_1255) pilC 1196225..1197484 (-) 1260 WP_014504324.1 type II secretion system F family protein Machinery gene
  XOCgx_RS05765 (XOCgx_1256) pilA2 1197838..1198263 (+) 426 WP_047340102.1 pilin Machinery gene
  XOCgx_RS05770 (XOCgx_1257) - 1198399..1199988 (+) 1590 WP_014504322.1 phosphoethanolamine transferase -
  XOCgx_RS05775 (XOCgx_1258) - 1199999..1200628 (+) 630 WP_024711608.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46112.66 Da        Isoelectric Point: 10.2301

>NTDB_id=383464 XOCgx_RS05760 WP_014504324.1 1196225..1197484(-) (pilC) [Xanthomonas oryzae pv. oryzicola strain GX01]
MSVARSAIKKQPVDRNTSMLQTFMWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=383464 XOCgx_RS05760 WP_014504324.1 1196225..1197484(-) (pilC) [Xanthomonas oryzae pv. oryzicola strain GX01]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGAAACACCAGCATGCTGCAGACCTTCATGTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGTATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTATCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGCTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTAAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGATGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTACCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7TE90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Acinetobacter baylyi ADP1

50.617

96.659

0.489
  pilC Acinetobacter baumannii D1279779

50.37

96.659

0.487
  pilG Neisseria gonorrhoeae MS11

43.108

95.227

0.411
  pilG Neisseria meningitidis 44/76-A

42.5

95.465

0.406
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

38.75

95.465

0.37

Multiple sequence alignment