Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HGI43_RS00495 Genome accession   NZ_CP051290
Coordinates   97985..98452 (-) Length   155 a.a.
NCBI ID   WP_000856645.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 92985..103452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI43_RS00480 (HGI43_00480) - 93388..94170 (-) 783 WP_202132953.1 glycosyltransferase family 2 protein -
  HGI43_RS00485 (HGI43_00485) tlpB 94201..95898 (-) 1698 WP_202135637.1 methyl-accepting chemotaxis protein TlpB -
  HGI43_RS00490 (HGI43_00490) - 96103..97848 (-) 1746 WP_202135638.1 5'-nucleotidase C-terminal domain-containing protein -
  HGI43_RS00495 (HGI43_00495) luxS 97985..98452 (-) 468 WP_000856645.1 S-ribosylhomocysteine lyase Regulator
  HGI43_RS00500 (HGI43_00500) - 98497..99639 (-) 1143 WP_202135639.1 cystathionine gamma-synthase -
  HGI43_RS00505 (HGI43_00505) - 99660..100577 (-) 918 WP_202132957.1 O-acetylserine-dependent cystathionine beta-synthase -
  HGI43_RS00510 (HGI43_00510) - 100685..101259 (+) 575 Protein_92 hypothetical protein -
  HGI43_RS00515 (HGI43_00515) dnaK 101398..103260 (-) 1863 WP_000521035.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17668.15 Da        Isoelectric Point: 6.8403

>NTDB_id=383464 HGI43_RS00495 WP_000856645.1 97985..98452(-) (luxS) [Helicobacter pylori strain ASHA-001]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=383464 HGI43_RS00495 WP_000856645.1 97985..98452(-) (luxS) [Helicobacter pylori strain ASHA-001]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAGTTATGTTGTAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374

Multiple sequence alignment