Detailed information NTG0383015

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: HF908_RS09400
• Genome accession: NZ_CP051171
• Coordinates: 1970124..1970777 (+)
• Length: 217 a.a.
• NCBI ID: WP_003267806.1
• Uniprot ID: Q8XYP7
• Organism: Ralstonia pseudosolanacearum strain RUN2279
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1965124..1975777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF908_RS09385 (HF908_09455)	-	1966065..1966259 (+)	195	WP_193025429.1	hypothetical protein	-
HF908_RS09390 (HF908_09460)	mnmC	1966502..1968511 (+)	2010	WP_193025431.1	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	-
HF908_RS09395 (HF908_09465)	tig	1968745..1970094 (+)	1350	WP_193025433.1	trigger factor	-
HF908_RS09400 (HF908_09470)	clpP	1970124..1970777 (+)	654	WP_003267806.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
HF908_RS09405 (HF908_09475)	clpX	1970943..1972217 (+)	1275	WP_020748515.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
HF908_RS09410 (HF908_09480)	lon	1972388..1974808 (+)	2421	WP_193025435.1	endopeptidase La	-
HF908_RS09415 (HF908_09485)	-	1974983..1975255 (+)	273	WP_020748517.1	HU family DNA-binding protein	-
HF908_RS09430 (HF908_09500)	-	1975527..1975697 (-)	171	WP_158491008.1	hypothetical protein	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 23756.26 Da
• Isoelectric Point: 5.1001

>NTDB_id=383015 HF908_RS09400 WP_003267806.1 1970124..1970777(+) (clpP) [Ralstonia pseudosolanacearum strain RUN2279]
MIRNELIDQLARTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDK
DISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEI
QAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKEYGLIDKVLARRGA

Nucleotide

• Length: 654 bp

>NTDB_id=383015 HF908_RS09400 WP_003267806.1 1970124..1970777(+) (clpP) [Ralstonia pseudosolanacearum strain RUN2279]
ATGATCCGCAATGAACTGATCGACCAACTCGCCCGCACCCAGGCTTCCGCGCTCGAAACGCAGGGGCTCGGACTGGTGCC
GATGGTGGTCGAGCAGTCGGGCCGCGGCGAACGCGCCTACGACATCTACTCGCGCCTGCTGAAGGAGCGCGTGATTTTCA
TGGTGGGCGAGGTCAACGACCAGACTGCCAATCTCGTGGTGGCGCAGTTGCTGTTCCTGGAAAGCGAGAACCCGGACAAG
GACATCTCGCTGTACATCAACTCGCCGGGCGGTTCGGTGTCGGCGGGCCTGGCGATGTACGACACGATGCAGTTCGTCAA
GCCCGACGTGTCCACGCTGTGCATGGGCATGGCCGCCAGCATGGGCGCGTTCCTGCTGGCCGCCGGCGCGAAGGGCAAGC
GCTATGCGCTGCCGAACTCGCGGATCATGATCCACCAGCCGCTGGGCGGTGCGCGCGGTCAGGCCTCGGACATCGAGATC
CAGGCGCGTGAAATCCTGTACCTGCGCGAACGTCTGAACACGATCCTGTCCGAAGTCACCGGCCAGCCCGTGGACAAGAT
CGCCCGCGATACGGACCGCGACAATTTCATGAGCGGCGACCAGGCCAAGGAGTACGGTCTGATCGACAAGGTGCTGGCTC
GGCGGGGTGCCTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (35-214)

3D structure

• AlphaFold DB: Q8XYP7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.708	88.479	0.599
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.368	87.558	0.59
clpP	Streptococcus pneumoniae Rx1	53.368	88.94	0.475
clpP	Streptococcus pneumoniae D39	53.368	88.94	0.475
clpP	Streptococcus pneumoniae R6	53.368	88.94	0.475
clpP	Streptococcus pneumoniae TIGR4	53.368	88.94	0.475
clpP	Lactococcus lactis subsp. cremoris KW2	53.684	87.558	0.47
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.105	87.558	0.456
clpP	Streptococcus thermophilus LMG 18311	51.295	88.94	0.456
clpP	Streptococcus thermophilus LMD-9	51.295	88.94	0.456
clpP	Streptococcus mutans UA159	51.309	88.018	0.452
clpP	Streptococcus pyogenes JRS4	51.579	87.558	0.452
clpP	Streptococcus pyogenes MGAS315	51.579	87.558	0.452