Detailed information NTG0383016

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: HF908_RS09405
• Genome accession: NZ_CP051171
• Coordinates: 1970943..1972217 (+)
• Length: 424 a.a.
• NCBI ID: WP_020748515.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN2279
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1965943..1977217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF908_RS09385 (HF908_09455)	-	1966065..1966259 (+)	195	WP_193025429.1	hypothetical protein	-
HF908_RS09390 (HF908_09460)	mnmC	1966502..1968511 (+)	2010	WP_193025431.1	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	-
HF908_RS09395 (HF908_09465)	tig	1968745..1970094 (+)	1350	WP_193025433.1	trigger factor	-
HF908_RS09400 (HF908_09470)	clpP	1970124..1970777 (+)	654	WP_003267806.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
HF908_RS09405 (HF908_09475)	clpX	1970943..1972217 (+)	1275	WP_020748515.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
HF908_RS09410 (HF908_09480)	lon	1972388..1974808 (+)	2421	WP_193025435.1	endopeptidase La	-
HF908_RS09415 (HF908_09485)	-	1974983..1975255 (+)	273	WP_020748517.1	HU family DNA-binding protein	-
HF908_RS09430 (HF908_09500)	-	1975527..1975697 (-)	171	WP_158491008.1	hypothetical protein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46360.55 Da
• Isoelectric Point: 5.5599

>NTDB_id=383016 HF908_RS09405 WP_020748515.1 1970943..1972217(+) (clpX) [Ralstonia pseudosolanacearum strain RUN2279]
MADKKGSTGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAISEKEGGLAVKSDLPTPHEIRQSLDQY
VIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGED
VENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQ
VDTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGLIPELIGRLPVVATLAKLDE
AALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIALKAIKRKTGARGLRSIVEHALMDVMYDLPNHKGVQKVVID
ESTIAGDGKPLLMYEEQPKVAGSN

Nucleotide

• Length: 1275 bp

>NTDB_id=383016 HF908_RS09405 WP_020748515.1 1970943..1972217(+) (clpX) [Ralstonia pseudosolanacearum strain RUN2279]
ATGGCGGACAAGAAAGGCTCGACTGGCGAAAAGCTGCTGTACTGCTCGTTCTGCGGCAAGAGCCAGCATGAAGTCAAGAA
ACTGATTGCCGGCCCCTCGGTCTTCATCTGCGATGAATGTATCGACCTGTGCAATGAAATCATCCGGGACGAGGCCGCGA
TCTCCGAGAAGGAGGGTGGGCTGGCGGTCAAATCCGACCTGCCGACCCCGCACGAGATTCGCCAGAGCCTGGATCAATAC
GTGATCGGTCAGGAGCAGGCCAAGAAGATCCTGGCGGTTGCGGTCTATAACCATTACAAGCGCTTGAAGCATCTCGGCAA
GAAGGATGACGTCGAGCTGTCCAAGAGCAACATCCTGCTCATCGGGCCGACCGGCTCGGGCAAGACGCTGCTGGCGCAGA
CGCTGGCTCGGCTGCTGAACGTGCCCTTCGTCATCGCCGACGCCACCACGCTGACCGAAGCCGGCTACGTGGGCGAGGAT
GTCGAGAACATCATCCAGAAGCTGCTGCAGAACTGCAATTACGAGGTCGACAAGGCACAGCGTGGCATTGTCTACATCGA
TGAGATCGACAAGATCTCTCGCAAGTCCGACAACCCGTCCATCACCCGAGACGTTTCCGGGGAAGGCGTGCAGCAGGCCC
TGCTGAAGCTGATCGAAGGGACGATGGCCTCGGTGCCGCCGCAGGGTGGGCGCAAGCATCCGAACCAGGATTTCCTCCAG
GTCGACACCACCAATATCCTGTTCATCTGCGGCGGTGCGTTCGATGGTCTCGAGAAGATCATTACGCAGCGCTCGGACAA
GTCCGGCATCGGCTTCGGCGCCGAGGTCAAGAGCAAGGAAGAGCGGGACGTCAACGAAGTGCTGCCGCAGGTGGAGCCGG
AAGACCTGATCAAGTTCGGCCTGATTCCCGAACTGATCGGCCGCCTGCCCGTGGTGGCGACGCTGGCCAAGTTGGACGAG
GCCGCGTTGATGGAGATCCTGGTCGAGCCGAAGAATGCAATCGTCAAGCAGTATCAGAAACTGCTGGCCATGGAAGGGGT
GGAGCTGGAAATCCGTCCGAGCGCGCTGACGGCGATTGCCCTCAAGGCAATCAAGCGCAAGACGGGTGCGCGCGGATTGC
GCTCCATCGTCGAGCATGCGCTGATGGATGTGATGTACGACCTTCCCAACCACAAGGGTGTGCAGAAGGTGGTGATCGAC
GAGAGCACGATCGCCGGCGACGGCAAGCCCTTGCTGATGTACGAAGAGCAACCCAAGGTTGCAGGTTCCAACTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-49)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.688	95.991	0.583
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.342	95.047	0.517