Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SP670_RS06765 Genome accession   NC_014498
Coordinates   1284422..1285072 (-) Length   216 a.a.
NCBI ID   WP_000387330.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 670-6B     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1279422..1290072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS06745 (SP670_1362) - 1280033..1281208 (-) 1176 WP_000655944.1 hypothetical protein -
  SP670_RS06750 (SP670_1363) - 1281212..1281799 (-) 588 WP_000939880.1 ATP-binding cassette domain-containing protein -
  SP670_RS14635 - 1281832..1282049 (-) 218 Protein_1305 hypothetical protein -
  SP670_RS06760 (SP670_1364) comEC/celB 1282198..1284438 (-) 2241 WP_000942383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SP670_RS06765 (SP670_1365) comEA/celA/cilE 1284422..1285072 (-) 651 WP_000387330.1 ComEA family DNA-binding protein Machinery gene
  SP670_RS06770 (SP670_1366) - 1285140..1285709 (-) 570 WP_000443775.1 GNAT family N-acetyltransferase -
  SP670_RS14255 (SP670_1369) ald 1285886..1286997 (+) 1112 Protein_1309 alanine dehydrogenase -
  SP670_RS13535 - 1287298..1287623 (-) 326 Protein_1310 TfoX/Sxy family protein -
  SP670_RS06795 (SP670_1371) - 1287626..1288126 (-) 501 WP_000566989.1 GNAT family N-acetyltransferase -
  SP670_RS06800 (SP670_1373) - 1288319..1289287 (-) 969 WP_000658181.1 PhoH family protein -
  SP670_RS06805 (SP670_1374) - 1289373..1289588 (-) 216 WP_001232085.1 YozE family protein -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 23229.65 Da        Isoelectric Point: 5.5171

>NTDB_id=38292 SP670_RS06765 WP_000387330.1 1284422..1285072(-) (comEA/celA/cilE) [Streptococcus pneumoniae 670-6B]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDLVSEKEVNKEEKEEPLEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGLGTASSISKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=38292 SP670_RS06765 WP_000387330.1 1284422..1285072(-) (comEA/celA/cilE) [Streptococcus pneumoniae 670-6B]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGAGGATT
TTTCCTGCTAAAACCAGCTCCACAAACACCTGTCAAAGAGACGAATTTGCAGGCTGAAGTCGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAAAAGGAAGAACCCCTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGCCAACAGACTGGTTTGGGGACAGCTTCTTCAATAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains


Predicted by InterproScan.

(151-214)

(76-126)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

100

100

1

  comEA/celA/cilE Streptococcus pneumoniae D39

100

100

1

  comEA/celA/cilE Streptococcus pneumoniae R6

100

100

1

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

97.222

100

0.972

  comEA/celA/cilE Streptococcus mitis NCTC 12261

96.296

100

0.963

  comEA/celA/cilE Streptococcus mitis SK321

90.278

100

0.903

  comEA Lactococcus lactis subsp. cremoris KW2

43.172

100

0.454

  comEA Bacillus subtilis subsp. subtilis str. 168

41.579

87.963

0.366

  comEA Latilactobacillus sakei subsp. sakei 23K

33.476

100

0.361


Multiple sequence alignment