Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BACI_RS18560 Genome accession   NC_014335
Coordinates   3542620..3543858 (-) Length   412 a.a.
NCBI ID   WP_000990716.1    Uniprot ID   -
Organism   Bacillus cereus biovar anthracis str. CI     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3537620..3548858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACI_RS18535 (BACI_c37260) spoVS 3537703..3537963 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BACI_RS18540 (BACI_c37270) - 3538112..3538906 (-) 795 WP_001221094.1 TIGR00282 family metallophosphoesterase -
  BACI_RS18545 (BACI_c37280) rny 3539072..3540634 (-) 1563 WP_000099773.1 ribonuclease Y -
  BACI_RS18550 (BACI_c37290) - 3541117..3541539 (-) 423 Protein_3552 DNA recombination/repair protein RecA -
  BACI_RS18555 (BACI_c37300) recA 3541867..3542475 (-) 609 Protein_3553 recombinase RecA -
  BACI_RS18560 (BACI_c37310) cinA 3542620..3543858 (-) 1239 WP_000990716.1 competence/damage-inducible protein CinA Machinery gene
  BACI_RS18565 (BACI_c37320) pgsA 3543879..3544457 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BACI_RS18570 (BACI_c37330) - 3544521..3545432 (-) 912 WP_000137487.1 helix-turn-helix domain-containing protein -
  BACI_RS18575 (BACI_c37340) - 3545454..3546239 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BACI_RS18580 (BACI_c37350) - 3546379..3546627 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  BACI_RS18585 (BACI_c37360) - 3546703..3547416 (-) 714 WP_000759618.1 SDR family oxidoreductase -
  BACI_RS18590 (BACI_c37370) - 3547520..3548806 (-) 1287 WP_000411951.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45437.64 Da        Isoelectric Point: 4.7777

>NTDB_id=37919 BACI_RS18560 WP_000990716.1 3542620..3543858(-) (cinA) [Bacillus cereus biovar anthracis str. CI]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQYVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=37919 BACI_RS18560 WP_000990716.1 3542620..3543858(-) (cinA) [Bacillus cereus biovar anthracis str. CI]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGTATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.78

99.515

0.585
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment