Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSYTB_RS04440 Genome accession   NZ_CP042804
Coordinates   906066..907283 (-) Length   405 a.a.
NCBI ID   WP_010196261.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. tabaci str. ATCC 11528     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 901066..912283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYTB_RS04405 (PSYTB_04410) - 901137..901766 (-) 630 WP_003430735.1 DUF1780 domain-containing protein -
  PSYTB_RS04410 (PSYTB_04415) - 901881..902195 (+) 315 Protein_799 hypothetical protein -
  PSYTB_RS04415 (PSYTB_04420) - 902192..903664 (+) 1473 WP_010196255.1 tetratricopeptide repeat protein -
  PSYTB_RS04420 (PSYTB_04425) - 903769..904227 (+) 459 WP_005782685.1 hypothetical protein -
  PSYTB_RS04425 (PSYTB_04430) yacG 904366..904575 (-) 210 WP_002552020.1 DNA gyrase inhibitor YacG -
  PSYTB_RS04430 (PSYTB_04435) coaE 904572..905195 (-) 624 WP_005782687.1 dephospho-CoA kinase -
  PSYTB_RS04435 (PSYTB_04440) pilD 905192..906064 (-) 873 WP_005782691.1 A24 family peptidase Machinery gene
  PSYTB_RS04440 (PSYTB_04445) pilC 906066..907283 (-) 1218 WP_010196261.1 type II secretion system F family protein Machinery gene
  PSYTB_RS04445 (PSYTB_04450) pilB 907286..908980 (-) 1695 WP_010196262.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSYTB_RS04450 (PSYTB_04455) - 909207..909641 (+) 435 WP_005782696.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PSYTB_RS04455 (PSYTB_04460) - 909892..910116 (-) 225 Protein_808 winged helix-turn-helix transcriptional regulator -
  PSYTB_RS04470 (PSYTB_04475) - 910621..911313 (+) 693 WP_005782701.1 DUF433 domain-containing protein -
  PSYTB_RS04475 (PSYTB_04480) - 911361..911906 (-) 546 WP_005782702.1 DUF1523 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43974.99 Da        Isoelectric Point: 10.2269

>NTDB_id=378652 PSYTB_RS04440 WP_010196261.1 906066..907283(-) (pilC) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
MASKAVKVIVYTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSASIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRTLVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
EKLKAKIKKAMTYPIAVLIVAIIVSGILLIKVVPQFQSVFAGFGADLPAFTLMVIGLSKIVQEWWLLIVGLLFAGFFLFK
RAYKKSQKFRDGLDRLLLKAPLIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFK
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=378652 PSYTB_RS04440 WP_010196261.1 906066..907283(-) (pilC) [Pseudomonas amygdali pv. tabaci str. ATCC 11528]
ATGGCCAGCAAGGCAGTCAAAGTCATCGTTTACACGTGGGAAGGTGTGGACAAGAAAGGCACTAAAACCAGTGGAGAACT
GAGCGGCCATAACCTGGCACTCGTAAAAGCACAACTGCGCAAGCAAGGCATCAATCCGACCAAAGTGCGCAAGAAGTCCG
CTTCGATCTTCGGCAAGGGCAAGAAAATAAAGCCACTGGATATCGCTTTTTTTTCTCGGCAGATGGCCACAATGATGAAA
GCCGGCGTTCCATTGCTGCAGTCGTTTGACATCATCAGCGAGGGTGCTGAAAACCCGAACATGCGTACGCTCGTGGGTTC
ACTCAAGCAGGAGGTGTCGGCCGGCAACAGCTTTGCGACGGCATTGCGACAGAAACCGGAATATTTCGATGACTTGTTTT
GCAACTTGGTAGATGCCGGTGAGCAAGCAGGGGCACTTGAGAGTCTGCTGGACCGAGTGGCAAGCTATAAGGAAAAGACG
GAAAAGCTCAAGGCTAAAATAAAAAAAGCAATGACGTACCCAATCGCCGTGTTGATCGTAGCGATTATTGTATCAGGTAT
TTTGTTGATCAAAGTGGTACCGCAGTTTCAATCCGTGTTTGCTGGTTTTGGTGCGGACTTACCTGCGTTCACTCTAATGG
TTATTGGTCTTTCAAAAATTGTTCAGGAGTGGTGGCTGTTAATCGTTGGCCTATTGTTTGCAGGATTTTTTTTATTTAAA
CGGGCTTACAAAAAATCTCAAAAATTTCGCGACGGACTTGATCGTCTTTTGCTAAAAGCACCACTCATTGGACCTCTTAT
TTTCAAATCTTCGGTAGCTCGCTATGCGCGCACACTTGCTACGACTTTTGCCGCTGGTGTACCGCTTGTAGAGGCGTTGG
ACTCGGTTGCTGGAGCCACAGGCAATGTAGTGTTCAAAAATGCAGTCAATAAGGTCAAGCAAGACGTTTCCACAGGTATG
CAATTGAATTTCTCGATGCGATCTACGGGAGTATTCCCAAGCCTTGCGATCCAGATGACAGCCATTGGCGAAGAATCCGG
CGCCCTGGACACCATGCTCGACAAGGTAGCTACTTATTACGAGGATGAAGTCGATAACATGGTCGACAACCTGACCAGCC
TGATGGAACCTATGATCATGGCCTTTTTGGGAGTGATCGTCGGCGGCCTTGTGATTGCCATGTACCTCCCCATCTTCAAA
CTCGGAAGCGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.074

100

0.741
  pilC Acinetobacter baylyi ADP1

60.584

100

0.615
  pilC Acinetobacter baumannii D1279779

60.891

99.753

0.607
  pilC Legionella pneumophila strain ERS1305867

52.217

100

0.523
  pilC Vibrio campbellii strain DS40M4

43.25

98.765

0.427
  pilG Neisseria gonorrhoeae MS11

42.965

98.272

0.422
  pilG Neisseria meningitidis 44/76-A

42.965

98.272

0.422
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Thermus thermophilus HB27

38.653

99.012

0.383

Multiple sequence alignment